PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Publication

Basic Information? help Back to Top

TF ID

Kalax.0216s0016.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

bHLH

Protein Properties

Length: 228aa MW: 25477.7 Da PI: 7.8994

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0216s0016.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.6	7e-11	110	157	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN+++ L +++P + +k + a +L +++YI+sLq Kalax.0216s0016.1.p 110 SHSLAERVRRKKINEKLKSLHDIVPGC----HKTMGMAVMLDVVIKYIQSLQ 157 8***********************9....788***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	8.9E-17	104	172	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.85E-13	104	161	No hit	No description
PROSITE profile	PS50888	15.097	106	156	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.0E-16	106	167	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.4E-8	110	157	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.9E-8	112	162	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:2000488	Biological Process	positive regulation of brassinosteroid biosynthetic process
GO:0005634	Cellular Component	nucleus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MEFIDNDFTI PNGITQYSNN SQPHFHLHHH QHQQVDHFSM SYIQTPLPHP TSHQFHQSLG 60 MPTPEICHKK FDKGGGRKRK RGGNNEGSAE GLKPSDVIHV RAKRGQATDS HSLAERVRRK 120 KINEKLKSLH DIVPGCHKTM GMAVMLDVVI KYIQSLQNQI EFLSMKLLAA SLFHDLNSTD 180 MDAVETMQGP PQGAVVQEME RIAAEGYGGD PYFSSASFPP QGFQNNQ*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	75	81	GRKRKRG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017222330.1	1e-61	PREDICTED: transcription factor bHLH75-like isoform X2
Swissprot	A4D998	6e-50	BH075_ARATH; Transcription factor bHLH75
TrEMBL	A0A175YRT8	1e-59	A0A175YRT8_DAUCS; Uncharacterized protein
STRING	XP_009602728.1	1e-57	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25330.1	4e-52	bHLH family protein

Link Out ? help Back to Top
Phytozome	Kalax.0216s0016.1.p

Publications ? help Back to Top
Khan M, et al. Interplay between phosphorylation and SUMOylation events determines CESTA protein fate in brassinosteroid signalling. Nat Commun, 2014. 5: p. 4687 [PMID:25134617] Eremina M, et al. Brassinosteroids participate in the control of basal and acquired freezing tolerance of plants. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(40): p. E5982-E5991 [PMID:27655893] Pfannebecker KC,Lange M,Rupp O,Becker A Seed Plant-Specific Gene Lineages Involved in Carpel Development. Mol. Biol. Evol., 2017. 34(4): p. 925-942 [PMID:28087776]