PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0215s0001.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family AP2
Protein Properties Length: 536aa    MW: 58377.6 Da    PI: 5.5082
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0215s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2552.1e-17189238155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Kalax.0215s0001.1.p 189 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 238
                          78*******************......55*************************98 PP
2AP241.53.4e-13281331155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s+++GV+ +k  grW+A+       g    +k+++lg f+t+ eAa+a+++a+ + +g
  Kalax.0215s0001.1.p 281 SKFRGVTLHK-CGRWEAR---M---GqllGKKYIYLGLFDTEIEAARAYDRAAIRCNG 331
                          79********.7******...5...334336**********99**********98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.66E-16189247IPR016177DNA-binding domain
PfamPF008471.9E-9189238IPR001471AP2/ERF domain
PROSITE profilePS5103218.017190246IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-17190246IPR001471AP2/ERF domain
CDDcd000181.23E-11190245No hitNo description
SMARTSM003805.2E-33190252IPR001471AP2/ERF domain
CDDcd000182.05E-25281341No hitNo description
PfamPF008477.5E-9281331IPR001471AP2/ERF domain
SuperFamilySSF541713.53E-16281340IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.4E-15282339IPR001471AP2/ERF domain
PROSITE profilePS5103214.974282339IPR001471AP2/ERF domain
SMARTSM003808.1E-32282345IPR001471AP2/ERF domain
PRINTSPR003672.7E-5283294IPR001471AP2/ERF domain
PRINTSPR003672.7E-5321341IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MLLRQRVDQQ QSSDSAAERV WSVSGDVELE MMSGGGEGGL VLDLNLSVGV SSESTRSGES  60
LLLMNEKFTG GSGTQMDESG NSNSSVVNAV EADDDSCSTR AVDMFAYFDA SKDSDGDVRT  120
DVMTKQLFPM METGSVDEAD GVVEGHGSRD WIDLSGNYGS IPEVQMVRQQ AQQQQVAKKS  180
RRGPRSRSSQ YRGVTFYRRT GRWESHIWDC GKQVYLGGFD TAHAAARAYD RAAIKFRGPD  240
ADINFSFSDY EEDLKQTKNL SKEEFVQILR RRSNGFSRGS SKFRGVTLHK CGRWEARMGQ  300
LLGKKYIYLG LFDTEIEAAR AYDRAAIRCN GKEALTNFEP STYEEELISM ATGTGCDYEL  360
DLSLGISIPS PVRATIQGSG AVPAQSCVGS YDAHSRNRPW VLNSTTPDGL FKGTTVASEN  420
LSPNISGYPL LYNSEDRAPA KTNAVHHTPG FPTSPWQSHG HVTYPPVSLF SSMSAAASSG  480
FQSPVPPALP TNPFSSPSLH FQLMASTGQS ASPSNLQCQM KPPRSSFITE DVNNF*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002284749.21e-147PREDICTED: ethylene-responsive transcription factor RAP2-7 isoform X1
TrEMBLA0A438KP411e-146A0A438KP41_VITVI; Ethylene-responsive transcription factor RAP2-7
TrEMBLF6GTW61e-146F6GTW6_VITVI; Uncharacterized protein
STRINGVIT_06s0004g03590.t011e-146(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-87related to AP2.7