PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Regulation |

Publication

Basic Information? help Back to Top

TF ID

Kalax.0212s0010.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

WOX

Protein Properties

Length: 304aa MW: 32498.8 Da PI: 5.1142

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0212s0010.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	47.4	3.3e-15	42	102	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+++eq+ +Le+ F++ +p +ee ++ + l + +++V++WFqNrR + ++ Kalax.0212s0010.1.p 42 RSRWTPKPEQILILESIFNSgMVNPPKEETVRIRRVLekfgPVGDANVFYWFQNRRSRSRR 102 89***************99************99999**************997 PP
2	Wus_type_Homeobox	104.7	5.9e-34	41	104	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtP+peQi iLe++++sG+++P+kee+ ri++ Le++G ++d+NVfyWFQNr++R+r++q Kalax.0212s0010.1.p 41 VRSRWTPKPEQILILESIFNSGMVNPPKEETVRIRRVLEKFGPVGDANVFYWFQNRRSRSRRRQ 104 689***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	8.98E-14	36	109	IPR009057	Homeodomain-like
PROSITE profile	PS50071	11.515	38	103	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	4.4E-9	38	109	IPR009057	Homeodomain-like
SMART	SM00389	5.1E-6	40	107	IPR001356	Homeobox domain
Pfam	PF00046	5.1E-13	42	102	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence Send to blast
MNDHGNPEAD SGSSITYDAS NPSQRQTHVA QSPDRASSEQ VRSRWTPKPE QILILESIFN 60 SGMVNPPKEE TVRIRRVLEK FGPVGDANVF YWFQNRRSRS RRRQRQIQAN MEANVRNTTQ 120 YDPSSNFNSP NSSMIIPIAS GFVGISGSNA AVDSGTSIPP FLIPSSSETL SGSASSSSPS 180 ALSAAAFGAT GVQGFLSEMG FEDIEDNGTQ AIASSFLCTS DVTSDLQYQQ PGGEGAEGGG 240 FVTVFINGVP TEVPRGPLDM KAMCGHDFLL VHSSGHPVPI NEYGFSAHSL QHGESYFLVA 300 KSI*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015578806.1	8e-73	WUSCHEL-related homeobox 11 isoform X2
Swissprot	Q6X7J3	9e-63	WOX11_ARATH; WUSCHEL-related homeobox 11
TrEMBL	B9SI52	5e-71	B9SI52_RICCO; Protein WUSCHEL, putative
STRING	XP_002525671.1	8e-72	(Ricinus communis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03660.2	2e-60	WUSCHEL related homeobox 11

Link Out ? help Back to Top
Phytozome	Kalax.0212s0010.1.p

Publications ? help Back to Top
Hu X,Xu L Transcription Factors WOX11/12 Directly Activate WOX5/7 to Promote Root Primordia Initiation and Organogenesis. Plant Physiol., 2016. 172(4): p. 2363-2373 [PMID:27784768] Sheng L, et al. Non-canonical WOX11-mediated root branching contributes to plasticity in Arabidopsis root system architecture. Development, 2017. 144(17): p. 3126-3133 [PMID:28743799] Liu J, et al. The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture. Plant Cell Physiol., 2018. 59(4): p. 734-743 [PMID:29361138] Baesso B, et al. Transcription factors PRE3 and WOX11 are involved in the formation of new lateral roots from secondary growth taproot in A. thaliana. Plant Biol (Stuttg), 2018. 20(3): p. 426-432 [PMID:29450949]