PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Kalax.0210s0073.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

bHLH

Protein Properties

Length: 329aa MW: 36401.6 Da PI: 7.9673

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0210s0073.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.4	8.4e-11	132	178	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR+++ + + L +P + kK +Ka++L A++Y+k+Lq Kalax.0210s0073.1.p 132 DHIIAERKRREKLSQHIISLSAAVPGL-----KKKDKASVLAGAIKYLKQLQ 178 699**********************.....89***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.751	128	177	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.8E-14	132	194	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.6E-8	132	178	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.34E-10	133	182	No hit	No description
SuperFamily	SSF47459	1.7E-14	133	193	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.0E-10	134	183	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
GMEDQSFINQ WMTNSHEDLS AVMLPMAAAT FSDSDLQHSM LYDYQQPPTK LLETTSWGSS 60 SVIEPAPDLQ TRNYHPATDV SAAAAASFLY PANPPQFPIG TQITDHHHQG EKGKVSITSD 120 AATTRISSGA QDHIIAERKR REKLSQHIIS LSAAVPGLKK KDKASVLAGA IKYLKQLQER 180 VKILEEQTKL NKTAQSVVVL GKAGLVVDDD SHKPLSGEMF MEVIPTEEQL PEIEARVCER 240 NVLLRIHSDR KKCVLEKTLR EMVKLRLTLV SSSVITFGSS ALDITITAQV DFRFRSKARS 300 TLINPAYLRI CCSHCTSSNL KHRLELIE*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	136	141	ERKRRE
2	137	142	RKRREK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018844450.1	1e-67	PREDICTED: transcription factor bHLH25-like
TrEMBL	A0A2I4GKM4	3e-66	A0A2I4GKM4_JUGRE; transcription factor bHLH25-like

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	3e-40	bHLH family protein

Link Out ? help Back to Top
Phytozome	Kalax.0210s0073.1.p