PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Kalax.0205s0022.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

bHLH

Protein Properties

Length: 298aa MW: 32369.3 Da PI: 6.7387

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0205s0022.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.3	2e-11	68	114	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h + Er RR+++ f L l+P++ +K +Ka+i+e Av Y++ L+ Kalax.0205s0022.1.p 68 HIQTERERRRKMSGMFGALHALIPHL----PPKTDKATIVESAVSYVRTLE 114 8899*******************6....39*************9985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.88E-14	61	125	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	13.872	63	113	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.58E-11	68	118	No hit	No description
Pfam	PF00010	3.9E-9	68	114	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.8E-13	68	127	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.2E-8	69	119	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MEDEKPQGEN NDVSFSCGSL SLWGAGGEEA EKGDGSGKRE ELGKGVAGGG EKGEEEGTAA 60 AEEQVELHIQ TERERRRKMS GMFGALHALI PHLPPKTDKA TIVESAVSYV RTLEERLQIL 120 QHRKQEKLEQ EKNGVGFNPF PPSPSSMIPP QPHPPPYEPM ALLADHHLHS SSSSRSITPP 180 NSNPTTPTTH NAPGSPIMML NPNRNSSSPR ETPVKLTLSS SSVMFRTFTS KNVVLCVCGE 240 EASFNICGAR RPGFYTGIAS VLDKYRLEVK SCHISSDTQS NRATLMIQAQ VRDQMSH*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49770.1	1e-19	bHLH family protein

Link Out ? help Back to Top
Phytozome	Kalax.0205s0022.1.p