PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0205s0005.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HSF
Protein Properties Length: 317aa    MW: 36041.6 Da    PI: 5.1236
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0205s0005.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind926.6e-291021941102
                          HHHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
         HSF_DNA-bind   1 aFlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 
                          +F +klyei++d++++ l++w  +g+sfvv+d + f + +LpkyFkh++f SF+ QL+ YgF+k++  +         we+++++F++gk
  Kalax.0205s0005.2.p 102 QFFSKLYEIVDDPNTDYLVQWGFDGQSFVVHDANAFCDFILPKYFKHNHFFSFTLQLHHYGFQKIDAAK---------WEYANEEFQRGK 182
                          599**************************************************************9988.........************ PP

                          XXXXXXXXXXXX CS
         HSF_DNA-bind  91 kellekikrkks 102
                          k+ll++ikr+ s
  Kalax.0205s0005.2.p 183 KHLLRYIKRRIS 194
                          *********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.77E-2799192IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.2E-3699192IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.105.4E-30100192IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000569.9E-14103126IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.2E-25103192IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.9E-14141153IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.9E-14154166IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MMEFDRVVAQ CDQAQKTRGE SSNTSLANNQ LGLITASSAS GVLEAGPDAS SPHVNNKISE  60
IVTEMVANVG QGIDVVPSCF SQEVIILPRQ THEKLKEIRV PQFFSKLYEI VDDPNTDYLV  120
QWGFDGQSFV VHDANAFCDF ILPKYFKHNH FFSFTLQLHH YGFQKIDAAK WEYANEEFQR  180
GKKHLLRYIK RRISGNRMEF ESEKQDETLK DAQIANLSKQ MSAFEERVQL IELEYKKIAC  240
FLSQTIQNPG FIAELIRGKA SLEAKPSEQE MATAVSDDTT KVPSASNHIL LVNAQTDDDW  300
DENICWHDLS KLWRIE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-1910019426131Heat shock factor protein 1
5d5v_B2e-1910019426131Heat shock factor protein 1
5d5v_D2e-1910019426131Heat shock factor protein 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51910.12e-37heat shock transcription factor A7A