 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Kalax.0203s0009.4.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
|
| Family |
MIKC_MADS |
| Protein Properties |
Length: 175aa MW: 20055 Da PI: 10.241 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Kalax.0203s0009.4.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 85.4 | 3.4e-27 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
ri+n++ rqvtfskRrng+lKKA+EL +LCdaev v++fsstgkly+++s
Kalax.0203s0009.4.p 10 RIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVMVFSSTGKLYDFAS 59
8***********************************************86 PP
|
| 2 | K-box | 81.7 | 1.7e-27 | 78 | 157 | 8 | 85 |
K-box 8 s..leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkek 85
+ +++++ + +q+e++ L++++++Lq+++R+l+G+d++ L +k+Lq+Le+qLeksl++iR++K++ll+++i+el +k
Kalax.0203s0009.4.p 78 QlmNSSSEIKFWQREANLLRQQLQSLQETHRQLMGDDMSGLGIKDLQNLENQLEKSLRSIRTTKDQLLIDEIQELNRKVM 157
13468999********************************************************************9976 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SMART | SM00432 | 3.4E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
| PROSITE profile | PS50066 | 31.3 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 4.78E-44 | 2 | 78 | No hit | No description |
| SuperFamily | SSF55455 | 4.71E-32 | 2 | 91 | IPR002100 | Transcription factor, MADS-box |
| PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 5.2E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 3.0E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 5.2E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 5.2E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF01486 | 4.9E-24 | 83 | 157 | IPR002487 | Transcription factor, K-box |
| PROSITE profile | PS51297 | 12.998 | 86 | 174 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 175 aa
Download sequence Send
to blast |
MGRGKVVIRR IDNSTSRQVT FSKRRNGLLK KAKELAILCD AEVGVMVFSS TGKLYDFAST 60
SMKSVIDRYN KSKEDQHQLM NSSSEIKFWQ REANLLRQQL QSLQETHRQL MGDDMSGLGI 120
KDLQNLENQL EKSLRSIRTT KDQLLIDEIQ ELNRKVMLSC KTTNFFVILS SNYT*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor. |
