PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Regulation |

Basic Information? help Back to Top

TF ID

Kalax.0201s0048.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

Trihelix

Protein Properties

Length: 684aa MW: 77596.8 Da PI: 7.0956

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0201s0048.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	38.5	3.1e-12	159	214	2	60
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkr 60 W+++ev aL+++r++ e++ We+vs+k+++ gf+rs+k+Ckek+e+ +k Kalax.0201s0048.1.p 159 WSNEEVVALLRIRSSSETSWFPP---DFTWEHVSRKLAAIGFKRSAKTCKEKFEEESKT 214 ************999887655...699***********************98875 PP
2	trihelix	89.7	3.2e-28	562	657	1	86
trihelix 1 rWtkqevlaLiearr.........emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcp 80 rW++++vlaLi++r + e++ +++++++plWe++s+km++ g++rs+k+Ckekwen+nk+++k+k+++ ++ +s++s+tcp Kalax.0201s0048.1.p 562 RWPRDQVLALIDLRCslltnkngdNEERDEGNKQQAAPLWERISRKMSQLGYQRSAKRCKEKWENINKYFRKTKDNNVNKkRSNDSRTCP 651 8***********966666554333333334569*************************************9888579*** PP trihelix 81 yfdqle 86 yf+ql Kalax.0201s0048.1.p 652 YFHQLS 657 **96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	3.7	155	214	IPR001005	SANT/Myb domain
Pfam	PF13837	1.1E-8	158	238	No hit	No description
PROSITE profile	PS50090	5.982	159	212	IPR017877	Myb-like domain
PROSITE profile	PS50090	6.191	555	628	IPR017877	Myb-like domain
SMART	SM00717	2.3	559	630	IPR001005	SANT/Myb domain
Pfam	PF13837	5.9E-19	561	659	No hit	No description
CDD	cd12203	3.46E-22	562	635	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 684 aa Download sequence Send to blast
MFDGMHNQDQ LFHQFISFSS PSSSRPPLPS SLHQQQLSSP FPASFPVASP PPIISPPPPP 60 HQSIQFSDLF HRPNLPYFHH LNPAPSSSHN LISSKQYTSD QHTNSNSISD VLEAQVHPKD 120 EVGLIRSLLP RAAASSSTLF VERERPSSSP PTLHQHEFWS NEEVVALLRI RSSSETSWFP 180 PDFTWEHVSR KLAAIGFKRS AKTCKEKFEE ESKTCFDTFN NRVISDRNSY RIFSELENIC 240 GRDDNNAEKS AIQLQANDRE EDPIININNH QDMQAEEEEG IECENKQANT RCNNVFEEDA 300 DAGVSPAMII QQYSQREQLE CREKVMKAKA KKKKKIRRNR QEHKFQIMKG LCEGLVNKMM 360 TQQEELHNKI LEDLLKRDEE NKAREEAWKR MEVERLNTEL EIRAQEQAIA GDRQAAIIDL 420 LSTTTTSATS HESRRGIIDA NIVAHLLKPI PHMSTKVITQ SHDQNPPPPD QPPCPNLQTL 480 IAHEALEPPQ TPTSTIEPHI SNPPACLPAS YSTTPVDSSG GRSASAQLIC YPKPSTKKAI 540 MQQPNNNSGA GILSEEDQHG VRWPRDQVLA LIDLRCSLLT NKNGDNEERD EGNKQQAAPL 600 WERISRKMSQ LGYQRSAKRC KEKWENINKY FRKTKDNNVN KKRSNDSRTC PYFHQLSQLY 660 EQGTLTAPPH HHTSLLENGQ NKM*

Sequence ? help Back to Top

Protein Sequence Length: 684 aa Download sequence Send to blast

MFDGMHNQDQ LFHQFISFSS PSSSRPPLPS SLHQQQLSSP FPASFPVASP PPIISPPPPP  60
HQSIQFSDLF HRPNLPYFHH LNPAPSSSHN LISSKQYTSD QHTNSNSISD VLEAQVHPKD  120
EVGLIRSLLP RAAASSSTLF VERERPSSSP PTLHQHEFWS NEEVVALLRI RSSSETSWFP  180
PDFTWEHVSR KLAAIGFKRS AKTCKEKFEE ESKTCFDTFN NRVISDRNSY RIFSELENIC  240
GRDDNNAEKS AIQLQANDRE EDPIININNH QDMQAEEEEG IECENKQANT RCNNVFEEDA  300
DAGVSPAMII QQYSQREQLE CREKVMKAKA KKKKKIRRNR QEHKFQIMKG LCEGLVNKMM  360
TQQEELHNKI LEDLLKRDEE NKAREEAWKR MEVERLNTEL EIRAQEQAIA GDRQAAIIDL  420
LSTTTTSATS HESRRGIIDA NIVAHLLKPI PHMSTKVITQ SHDQNPPPPD QPPCPNLQTL  480
IAHEALEPPQ TPTSTIEPHI SNPPACLPAS YSTTPVDSSG GRSASAQLIC YPKPSTKKAI  540
MQQPNNNSGA GILSEEDQHG VRWPRDQVLA LIDLRCSLLT NKNGDNEERD EGNKQQAAPL  600
WERISRKMSQ LGYQRSAKRC KEKWENINKY FRKTKDNNVN KKRSNDSRTC PYFHQLSQLY  660
EQGTLTAPPH HHTSLLENGQ NKM*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28300.1	2e-75	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Kalax.0201s0048.1.p