PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Kalax.0193s0058.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

HD-ZIP

Protein Properties

Length: 329aa MW: 36654.3 Da PI: 4.5606

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0193s0058.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.6	1.2e-19	84	137	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t +ql+ Le+ Fe ++++ +++ +LAk lgL+ rqV +WFqNrRa++k Kalax.0193s0058.1.p 84 KKRRLTVDQLKFLERSFEADNKLEPDRKLQLAKDLGLQPRQVAIWFQNRRARWK 137 55689************************************************9 PP
2	HD-ZIP_I/II	128	4.1e-41	84	174	2	92
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 kkrrl+ +q+k+LE+sFe+++kLep+rK +la++Lglqprqva+WFqnrRAR+k+kq+E+dy++L+++++alk+e +rL++e+++L++++ Kalax.0193s0058.1.p 84 KKRRLTVDQLKFLERSFEADNKLEPDRKLQLAKDLGLQPRQVAIWFQNRRARWKAKQMERDYDVLQASFNALKAEYDRLSQEKDDLKAQI 173 9**************************************************************************************998 PP HD-ZIP_I/II 92 k 92 + Kalax.0193s0058.1.p 174 S 174 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.91E-19	70	140	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.103	79	139	IPR001356	Homeobox domain
SMART	SM00389	1.1E-18	82	143	IPR001356	Homeobox domain
Pfam	PF00046	5.2E-17	84	137	IPR001356	Homeobox domain
CDD	cd00086	2.61E-18	84	140	No hit	No description
Gene3D	G3DSA:1.10.10.60	4.5E-20	86	146	IPR009057	Homeodomain-like
PRINTS	PR00031	1.3E-5	110	119	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	114	137	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.3E-5	119	135	IPR000047	Helix-turn-helix motif
Pfam	PF02183	3.9E-14	139	177	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MASGGRVYGG SNLPPIMLQP SAAPGCPPLD PFYLSGSPPP FLLGPTSMVS FEDVNGSGNS 60 KRSLFRSYDQ EEDDYDEYFN QSGKKRRLTV DQLKFLERSF EADNKLEPDR KLQLAKDLGL 120 QPRQVAIWFQ NRRARWKAKQ MERDYDVLQA SFNALKAEYD RLSQEKDDLK AQISILSDEF 180 AQKHQGTNMA EAPQALPPEN PAAASISEES KQDENSTSPK NGNKGVLDSD STSTKKREGD 240 NVFDADSHYY ISGVHSPHLE HVDSSFMLEP DSSDLSQDED DSLSRGFLPS TPYRLPKLEP 300 GDCLLASSST SRNFGFPVDD NAFWSWSF*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	131	139	RRARWKAKQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021287102.1	1e-100	homeobox-leucine zipper protein HAT5-like
TrEMBL	A0A061FXY9	1e-100	A0A061FXY9_THECC; Homeobox protein, putative isoform 1
STRING	EOY21713	6e-99	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	5e-40	homeobox 1

Link Out ? help Back to Top
Phytozome	Kalax.0193s0058.1.p