PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0193s0058.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 329aa MW: 36654.3 Da PI: 4.5606 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.6 | 1.2e-19 | 84 | 137 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t +ql+ Le+ Fe ++++ +++ +LAk lgL+ rqV +WFqNrRa++k Kalax.0193s0058.1.p 84 KKRRLTVDQLKFLERSFEADNKLEPDRKLQLAKDLGLQPRQVAIWFQNRRARWK 137 55689************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 128 | 4.1e-41 | 84 | 174 | 2 | 92 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 kkrrl+ +q+k+LE+sFe+++kLep+rK +la++Lglqprqva+WFqnrRAR+k+kq+E+dy++L+++++alk+e +rL++e+++L++++ Kalax.0193s0058.1.p 84 KKRRLTVDQLKFLERSFEADNKLEPDRKLQLAKDLGLQPRQVAIWFQNRRARWKAKQMERDYDVLQASFNALKAEYDRLSQEKDDLKAQI 173 9**************************************************************************************998 PP HD-ZIP_I/II 92 k 92 + Kalax.0193s0058.1.p 174 S 174 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.91E-19 | 70 | 140 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.103 | 79 | 139 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.1E-18 | 82 | 143 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 5.2E-17 | 84 | 137 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.61E-18 | 84 | 140 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.5E-20 | 86 | 146 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.3E-5 | 110 | 119 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 114 | 137 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.3E-5 | 119 | 135 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 3.9E-14 | 139 | 177 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MASGGRVYGG SNLPPIMLQP SAAPGCPPLD PFYLSGSPPP FLLGPTSMVS FEDVNGSGNS 60 KRSLFRSYDQ EEDDYDEYFN QSGKKRRLTV DQLKFLERSF EADNKLEPDR KLQLAKDLGL 120 QPRQVAIWFQ NRRARWKAKQ MERDYDVLQA SFNALKAEYD RLSQEKDDLK AQISILSDEF 180 AQKHQGTNMA EAPQALPPEN PAAASISEES KQDENSTSPK NGNKGVLDSD STSTKKREGD 240 NVFDADSHYY ISGVHSPHLE HVDSSFMLEP DSSDLSQDED DSLSRGFLPS TPYRLPKLEP 300 GDCLLASSST SRNFGFPVDD NAFWSWSF* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 131 | 139 | RRARWKAKQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021287102.1 | 1e-100 | homeobox-leucine zipper protein HAT5-like | ||||
TrEMBL | A0A061FXY9 | 1e-100 | A0A061FXY9_THECC; Homeobox protein, putative isoform 1 | ||||
STRING | EOY21713 | 6e-99 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 5e-40 | homeobox 1 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0193s0058.1.p |