PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0186s0015.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family Trihelix
Protein Properties Length: 396aa    MW: 44950.2 Da    PI: 6.8364
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0186s0015.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix828.3e-26106207186
             trihelix   1 rWtkqevlaLiearremeerlrrgk...............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tse 74 
                          +Wt+ +v++Li a+ +++++ +++                +kk++W++vs++m+e+gf++sp+qC++k+++lnkryk+++e+ +k+ +++
  Kalax.0186s0015.1.p 106 KWTDGMVRLLIMAVYYIGDECGSEGggeagagkkkagalmQKKGKWKSVSRAMMEKGFHVSPQQCEDKFNDLNKRYKRVNEILGKGtACK 195
                          7**************9999999754455677788899999**********************************************55** PP

             trihelix  75 ssstcpyfdqle 86 
                          ++++ +++dq++
  Kalax.0186s0015.1.p 196 VVENQSLLDQMD 207
                          ***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.8E-22104233No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MEGNGLRGGI FSNLSPGILG LEMPIQQQPP PPPQPQPPQQ RPQNPHHFHP QMVAFARPET  60
DHSSQMKQPG YPYAANPRQL SDDEEGGTEE NAADGKRKGS PWQRMKWTDG MVRLLIMAVY  120
YIGDECGSEG GGEAGAGKKK AGALMQKKGK WKSVSRAMME KGFHVSPQQC EDKFNDLNKR  180
YKRVNEILGK GTACKVVENQ SLLDQMDHLT PKSKEEARKL LNSKHLFFRE MCAYHNSCGG  240
GAGHHSPEQA LAPRNSSETL QIHHSNNSHN HSEGEGDDED SENEEDDDSQ NEEEEGEREW  300
LKRRMVRVEE ERVGQEMEAF EIEKERLKWA KYSSKKEREM ERKRLRNERA KLENDRMVLL  360
LKHKELQIMS HFSQQQQQQM GACNNKRADP SSVTG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012468221.11e-118PREDICTED: 46 kDa FK506-binding nuclear protein-like isoform X1
TrEMBLA0A2P5WQP11e-136A0A2P5WQP1_GOSBA; Uncharacterized protein
STRINGcassava4.1_007978m1e-138(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.16e-70sequence-specific DNA binding transcription factors