PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0181s0055.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 384aa    MW: 42097.3 Da    PI: 7.9617
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0181s0055.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.72.1e-05216235120
                          EEETTTTEEESSHHHHHHHH CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                          + C++C+k+F+r  n++ H+
  Kalax.0181s0055.1.p 216 FACSICTKTFNRYNNMQMHM 235
                          78*****************9 PP
2zf-C2H212.40.00049302322323
                          ETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                          C +C+ksF  k + ++H +++
  Kalax.0181s0055.1.p 302 CRKCSKSFAVKGDWRTHEKNC 322
                          *****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.79E-5211239No hitNo description
Gene3DG3DSA:3.30.160.602.6E-5216235IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.45216243IPR007087Zinc finger, C2H2
SMARTSM003550.27216238IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280218238IPR007087Zinc finger, C2H2
SMARTSM00355240263295IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.67E-5286320No hitNo description
Gene3DG3DSA:3.30.160.603.5E-4287320IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035591300320IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MGFKIISSFY HAVEDAQSDG ITMNNSNING SVFQSPPAFI EWLKPFPSSP LPTDASSSSS  60
PSSSETQQPQ QQHMMVGTPR LADHKPASAS VQCLPLLSKL VEDTSNHTPS SKPVKDEQQE  120
EVDGDGGFGT LLQDDDKATV ALCIGLSTGT PSDYDLINLY GAGDLRGGAG DKMTSSAVKK  180
RASSFSDEYA AASSFNSESR FWIPTPAQIM VGPMQFACSI CTKTFNRYNN MQMHMWGHGS  240
EYRKGPESLK GSQPAAMLRL PCYCCAQGCK NNINHPRAKP LKDFRTLQTH FKRKHGSKPF  300
LCRKCSKSFA VKGDWRTHEK NCGKLWYCTC GSDFKHKRSL KDHIRSFGKG HSPYPPMEGL  360
QFDDKEQCVM AGSSEEDEVS TAT*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021716386.11e-135zinc finger protein WIP3-like
SwissprotQ9SGD11e-119ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLA0A1R3FUS81e-132A0A1R3FUS8_COCAP; Uncharacterized protein
STRINGXP_008378253.11e-132(Malus domestica)
STRINGXP_010089843.11e-131(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.11e-118WIP domain protein 3
Publications ? help Back to Top
  1. Zhou X,Meier I
    Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5
    [PMID:25074908]