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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0177s0050.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | AP2 | ||||||||
Protein Properties | Length: 551aa MW: 60382.8 Da PI: 8.7506 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 45 | 2.7e-14 | 287 | 336 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + ++ +lg+f t eeAa+a++ a+ k++g Kalax.0177s0050.1.p 287 YRGVTRHHQHGRWQARIGRVAG---NRDLYLGTFSTQEEAAEAYDIAAIKFRG 336 9***************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.38E-11 | 140 | 251 | No hit | No description |
PROSITE profile | PS51032 | 15.053 | 141 | 250 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.4E-18 | 141 | 256 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.5E-11 | 141 | 163 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.66E-8 | 213 | 251 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.5E-11 | 214 | 250 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.22E-17 | 285 | 346 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 4.89E-24 | 285 | 346 | No hit | No description |
SMART | SM00380 | 1.1E-32 | 286 | 350 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.7E-18 | 286 | 345 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.151 | 286 | 344 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.1E-9 | 287 | 336 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 551 aa Download sequence Send to blast |
MNRNGHEHQS SSSSCDNNWL AFTLSNSTPL SLFNSAAAAG EGPKLEDFLG AATGSNSNSN 60 RAVVDSQTVD SRQQHQQHNQ QQMYEEGSEL KTIAASFFAR HRNGSSSSGV GRQSRDQQQM 120 VAVQQPAAKK TVETFGHRTS VFRGVTRHRW TGRYEAHLWD NSCRREGQSR KGRQVLNSLF 180 KMFLMRCLFV VCGRGRVGGG TWRLMLEIAR IDDCGLPVYL GGYEKEDKAA QAYDLAALKY 240 WGPTTSTNFP IGNYEKELEE MKNMTKQEFV ASLRRRSSGF SRGASMYRGV TRHHQHGRWQ 300 ARIGRVAGNR DLYLGTFSTQ EEAAEAYDIA AIKFRGLNAV TNFDMSRYDV KSIASSNLPI 360 GGIGNKPKTS SESISEGRSD NDHDISECSV SFVPLDQQPQ PIYSNLNFAL PVKADPTSNY 420 CPALLGYGNN QITLATPSPN SNNNLINNYF HSNNSAAAGP HYSNNMNIYY AADGLSLAGS 480 EPGSVETRSV IPYATPISMT MTNSSGVVGT HENVSSSGNG ISNWVAPNPH QYQTGKPSLS 540 VFQTPIFGIE * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007014251.2 | 1e-160 | PREDICTED: AP2-like ethylene-responsive transcription factor AIL5 | ||||
Swissprot | Q6PQQ3 | 1e-138 | AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5 | ||||
TrEMBL | A0A061GPU4 | 1e-159 | A0A061GPU4_THECC; AP2-like ethylene-responsive transcription factor AIL5, putative | ||||
STRING | EOY31870 | 1e-160 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57390.1 | 1e-115 | AINTEGUMENTA-like 5 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0177s0050.1.p |
Publications ? help Back to Top | |||
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