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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0173s0047.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | MYB_related | ||||||||
Protein Properties | Length: 252aa MW: 28003.1 Da PI: 9.699 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 37 | 8e-12 | 5 | 56 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 +++WT+eE+e l+ +++++G g Wk I +Rt ++k++w+++ Kalax.0173s0047.1.p 5 KLKWTAEEEEALLSGIARYGAGKWKNILTDPEfapvfSKRTNIDLKDKWRNL 56 689****************************9*****88***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.978 | 1 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.01E-15 | 2 | 59 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-6 | 4 | 59 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.0E-8 | 5 | 56 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.6E-13 | 5 | 57 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 6.05E-19 | 7 | 57 | No hit | No description |
Gene3D | G3DSA:1.10.10.10 | 2.9E-14 | 114 | 179 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00526 | 3.6E-18 | 115 | 180 | IPR005818 | Linker histone H1/H5, domain H15 |
PROSITE profile | PS51504 | 23.098 | 117 | 185 | IPR005818 | Linker histone H1/H5, domain H15 |
SuperFamily | SSF46785 | 1.03E-14 | 118 | 184 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00538 | 6.1E-12 | 119 | 178 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006334 | Biological Process | nucleosome assembly | ||||
GO:0000786 | Cellular Component | nucleosome | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MGNPKLKWTA EEEEALLSGI ARYGAGKWKN ILTDPEFAPV FSKRTNIDLK DKWRNLTVSS 60 TGHHGMKDKT RIPKLKSLMA STSSNAQRNE SLAIVPHEAP LDVVMEDAPN GTHEPKNAPK 120 YNDMIFEAIS AAKDPKGLDI NAIITFIEKK QEVPPNFRRL LSSKLRRLVT QGKLDKVQNC 180 YIIKKDMLPL SLPESKTSPA PAQKETRLQH PRTNGHAMVD TAMEEASISA AYKIADAENK 240 SFLASEAVKE SE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015890673.1 | 1e-87 | telomere repeat-binding factor 4 | ||||
TrEMBL | A0A200QD61 | 5e-88 | A0A200QD61_9MAGN; SANT/Myb domain | ||||
STRING | EOY27161 | 2e-84 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17520.1 | 5e-63 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0173s0047.1.p |