PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0161s0010.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 293aa    MW: 31964.3 Da    PI: 8.4173
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0161s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.00026265286323
                          ETTTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                          Cp+C+k F ++ +L+ H+ + H
  Kalax.0161s0010.1.p 265 CPKCSKGFLDPVSLVEHLERdH 286
                          ******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183102.25E-12458No hitNo description
PROSITE profilePS510397.7161059IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.107.3E-101153IPR000058Zinc finger, AN1-type
SMARTSM001540.0161352IPR000058Zinc finger, AN1-type
PfamPF014286.0E-131351IPR000058Zinc finger, AN1-type
SuperFamilySSF1183101.49E-885142No hitNo description
Gene3DG3DSA:4.10.1110.103.4E-1091144IPR000058Zinc finger, AN1-type
PROSITE profilePS510397.80998147IPR000058Zinc finger, AN1-type
SMARTSM001540.089101142IPR000058Zinc finger, AN1-type
PfamPF014281.7E-7101140IPR000058Zinc finger, AN1-type
SMARTSM003550.033225248IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280227248IPR007087Zinc finger, C2H2
SMARTSM0035513263286IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.933263291IPR007087Zinc finger, C2H2
PROSITE patternPS000280265286IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MGTPQFPDLG KHCSLLDCKQ IDFLPFTCDR CHEVFCLQHR SYNLHKCPNA GKNDVNVVIC  60
PLCAKGVRLS PDEDPNITWE SHVNSNCDPS NYEKVAKKKK CPVPGCREFL TFSNTIKCRD  120
CTIDHCLKHR FGPDHKCPGP PKKLDSGFPF LGLLNQSRKV ESKTSLTPVP AASSNRWTTS  180
FLNVASSLKA SAEAGISKFS SEFNQAVQVQ SNSSSSSRSG SGPPEVCPQC RAKFSSVTAL  240
VEHFQKVHET NDGRAGVKKV TIDACPKCSK GFLDPVSLVE HLERDHGGTS KA*
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00306DAPTransfer from AT2G41835Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, dehydration and salt stress. {ECO:0000269|PubMed:17033811}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002283838.11e-152PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
SwissprotQ0D5B91e-124SAP16_ORYSJ; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
TrEMBLA0A438C0101e-151A0A438C010_VITVI; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
STRINGVIT_08s0007g08360.t011e-152(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-120C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]