 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Kalax.0160s0038.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
|
| Family |
bHLH |
| Protein Properties |
Length: 191aa MW: 21309.4 Da PI: 7.7355 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Kalax.0160s0038.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 52.5 | 8.8e-17 | 83 | 129 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
hn+ E+rRR+riN+++ L++l+P++ K +Ka++L +A+eY+k+Lq
Kalax.0160s0038.1.p 83 VHNMSEKRRRSRINEKMKALQDLIPNS-----NKTDKASMLDEAIEYLKQLQ 129
6*************************7.....5******************9 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 191 aa
Download sequence Send
to blast |
MFDHAAAPSP AFSDSDEISA LLRQILHRSS NQCNRQLQTP TELPIDDLEE HDGPSEVGEG 60
LEALVEEATK RRRSSKRRRA AEVHNMSEKR RRSRINEKMK ALQDLIPNSN KTDKASMLDE 120
AIEYLKQLQL RVQMLTLRNG LILHPMSLPR RPAMQPMLGV MSGASLEALK LDLSSIMGSD 180
ESTLKPSTVL *
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 76 | 91 | RRRAAEVHNMSEKRRR |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor that plays a role in floral organogenesis. Promotes the growth of carpel margins and of pollen tract tissues derived from them. {ECO:0000269|PubMed:10225997, ECO:0000269|Ref.8}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Down-regulated by the A class gene AP2 in the first whorl and by ARF3/ETT in gynoecium. {ECO:0000269|PubMed:11245574}. |
| Publications
? help Back to Top |
- Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
Differentiation, 2010. 80(1): p. 1-8
[PMID:20219281] - Pabón-Mora N,Wong GK,Ambrose BA
Evolution of fruit development genes in flowering plants.
Front Plant Sci, 2014. 5: p. 300
[PMID:25018763] - Moubayidin L,Ostergaard L
Dynamic control of auxin distribution imposes a bilateral-to-radial symmetry switch during gynoecium development.
Curr. Biol., 2014. 24(22): p. 2743-8
[PMID:25455035] - Pfannebecker KC,Lange M,Rupp O,Becker A
Seed Plant-Specific Gene Lineages Involved in Carpel Development.
Mol. Biol. Evol., 2017. 34(4): p. 925-942
[PMID:28087776] - Zumajo-Cardona C,Ambrose BA,Pabón-Mora N
Evolution of the SPATULA/ALCATRAZ gene lineage and expression analyses in the basal eudicot, Bocconia frutescens L. (Papaveraceae).
Evodevo, 2017. 8: p. 5
[PMID:28331573] - Reyes-Olalde JI, et al.
The bHLH transcription factor SPATULA enables cytokinin signaling, and both activate auxin biosynthesis and transport genes at the medial domain of the gynoecium.
PLoS Genet., 2017. 13(4): p. e1006726
[PMID:28388635] - Wu M, et al.
SPATULA regulates floral transition and photomorphogenesis in a PHYTOCHROME B-dependent manner in Arabidopsis.
Biochem. Biophys. Res. Commun., 2018. 503(4): p. 2380-2385
[PMID:29966653]
|
