PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0160s0031.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NAC
Protein Properties Length: 365aa    MW: 41982.7 Da    PI: 6.5115
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0160s0031.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.71.1e-5381371129
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeek.ewyfFskrdkkyatgkrknratksgyWkatg 87 
                          +ppGfrFhPtdeelv++yL+k++++k+++l +vik+vd+y++ePwdL++  k+ +e++ ++yfFs++dkky+tg+r+nratk+g+Wkatg
  Kalax.0160s0031.1.p   8 VPPGFRFHPTDEELVDYYLRKRIASKQIDL-DVIKDVDLYRIEPWDLQElcKIGTEDQtDYYFFSHKDKKYPTGTRTNRATKAGFWKATG 96 
                          69****************************.9***************95455555444488***************************** PP

                  NAM  88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                          +dk++++ k+ lvg++ktLvfykgrap+g+k dW+mheyrle
  Kalax.0160s0031.1.p  97 RDKAIYV-KHGLVGMRKTLVFYKGRAPNGQKLDWIMHEYRLE 137
                          *******.8889****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.36E-595157IPR003441NAC domain
PROSITE profilePS5100557.6768157IPR003441NAC domain
PfamPF023653.3E-279136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MNSFSHVVPP GFRFHPTDEE LVDYYLRKRI ASKQIDLDVI KDVDLYRIEP WDLQELCKIG  60
TEDQTDYYFF SHKDKKYPTG TRTNRATKAG FWKATGRDKA IYVKHGLVGM RKTLVFYKGR  120
APNGQKLDWI MHEYRLETNE NAAPQEEGWV VCRVFRKRMV TTNMSKARDH QHESPYWYEE  180
QVSFMADMDS PMRMLSSHPC PPPNHPYHSS SYSGKQEQQL GLQNYIISQE TSFLDLPQLE  240
SPEFPMPASA NNASYSFRDQ VVQHGYQLNV MYGNNINNSF TSNEHHQAVD RVSTDWRVLD  300
KFVASQLSHE NAGEKNNYLN NGAGYDMDQD EMSGLIDSNG SKRVKMGTEF ASSSTCSGQA  360
DQWT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-46815815169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010259028.11e-147PREDICTED: NAC domain-containing protein 7
SwissprotQ9FWX21e-126NAC7_ARATH; NAC domain-containing protein 7
TrEMBLA0A1U7ZYT71e-145A0A1U7ZYT7_NELNU; NAC domain-containing protein 7
STRINGXP_010259028.11e-146(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.11e-127NAC 007
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]