PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0159s0058.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 602aa    MW: 65623.1 Da    PI: 9.0589
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0159s0058.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.26e-0579101123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          + C+ C+k F r  nL+ H r H
  Kalax.0159s0058.1.p  79 FICEVCKKGFQREQNLQLHRRGH 101
                          89*******************88 PP
2zf-C2H211.80.00073155177123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          +kC++C+k +  +s+ k H +t+
  Kalax.0159s0058.1.p 155 WKCQKCSKKYAVQSDWKAHSKTC 177
                          58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.0E-578101IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.05E-678101No hitNo description
PROSITE profilePS5015710.67979101IPR007087Zinc finger, C2H2
SMARTSM003550.01279101IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028081101IPR007087Zinc finger, C2H2
SMARTSM00355180120150IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.8E-4143176IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.05E-6150175No hitNo description
SMARTSM00355150155175IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 602 aa     Download sequence    Send to blast
MAAEAGWLFG LRGEEEDENQ LRMNMHRQFQ QSSHPSAKST MRASADAAPS TQKKKRTQPD  60
PDAEVIALSP KTLMATNRFI CEVCKKGFQR EQNLQLHRRG HNLPWKLKQK STKEVKKKVY  120
LCPEPTCVHH DPARALGDLT GIKKHFSRKH GEKNWKCQKC SKKYAVQSDW KAHSKTCGTK  180
EYRCDCGTLF SRRDSFVTHR AFCDALAREN AMNPTNLNAI TSQLFGPNRV FGNQIRPHHQ  240
GLNFHQHNTQ QPSNNLPAAH TGDGFRPFNS LLPPLSGSAV RPNSTIVFGS SDYHEEDQDH  300
HSPHKVVFSG MMQQLPQDHQ IPNEHTDHSF FSNIARKNDS ESPTSDNINP RHLSSSNLFA  360
NQFSTGGAIG GSLNNARGPT AGLFSGDAIL GDQISPSLYS SSVSLQNTSN ASASAHLSAT  420
ALLQKAAQVG SSCSINGSSS LLRSLGSSLS GTSLKHDLKA SPGATNFGAL LGDENNKHLH  480
EIMSSLGGGG STPTSSMLGT LAKGISGFPD DHQGENNNGL CSTKLSFGKL LEEQYSKEQP  540
QNLLSASIGG CDRLTRDFLG IGQIVRQMSG GFSENDMLQL QRGHQMSSKT SIRGSRDFDD  600
H*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-32151211363Zinc finger protein JACKDAW
5b3h_F3e-32151211363Zinc finger protein JACKDAW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017971628.11e-148PREDICTED: protein indeterminate-domain 5, chloroplastic isoform X1
RefseqXP_021293036.11e-148protein indeterminate-domain 5, chloroplastic
TrEMBLA0A1Q3BMA51e-147A0A1Q3BMA5_CEPFO; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.17e-97indeterminate(ID)-domain 5