PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Kalax.0157s0034.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

MYB_related

Protein Properties

Length: 416aa MW: 45228 Da PI: 7.9712

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0157s0034.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.4	1.1e-15	52	96	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+eE++++++a k++G W+ I ++g ++t+ q++s+ qk+ Kalax.0157s0034.1.p 52 REKWTEEEHQKFIEALKLFGRA-WRQIEDYIG-TKTAVQIRSHAQKF 96 789***************88.*****.**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.92E-15	46	102	IPR009057	Homeodomain-like
PROSITE profile	PS51294	20.677	47	101	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	6.0E-9	49	104	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.6E-16	50	99	IPR006447	Myb domain, plants
SMART	SM00717	1.1E-12	51	99	IPR001005	SANT/Myb domain
Pfam	PF00249	2.0E-13	52	95	IPR001005	SANT/Myb domain
CDD	cd00167	9.20E-10	54	97	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence Send to blast
MATVQKQTSG FGSSITSIAT GSNSHNVSCE TNLDGSGVAL KVRKPYTISK QREKWTEEEH 60 QKFIEALKLF GRAWRQIEDY IGTKTAVQIR SHAQKFFSKV TKEGANSVEA SNEAIKIPPP 120 RPKRKPSHPY PRKLAEAPNK TRSCPNIQEN GTSFNLENME RKAQSPTSVL SPEGSHTSTP 180 HLKGQGSDSV SPTSSGSNLS HILDMDSLTK NNSTLEEKER DISLTLTLSV PSLNASTIMH 240 AGKEFKVAEL TNDDDVYLEA ETMFVGGGDT PLTTIKLFGH TVVVTKPLEL SAGMENVVSH 300 TATRDLLMFS DLHLNPLVSK GSHAYVSSPG VGLCLDGQLV PSETMMGERS RERGSKTLSF 360 NGSSSDSINK MQIAEIDQDS AESVIKTSHP PILNTSEYMK GFVPYKRCVS VKLCL*

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence Send to blast

MATVQKQTSG FGSSITSIAT GSNSHNVSCE TNLDGSGVAL KVRKPYTISK QREKWTEEEH  60
QKFIEALKLF GRAWRQIEDY IGTKTAVQIR SHAQKFFSKV TKEGANSVEA SNEAIKIPPP  120
RPKRKPSHPY PRKLAEAPNK TRSCPNIQEN GTSFNLENME RKAQSPTSVL SPEGSHTSTP  180
HLKGQGSDSV SPTSSGSNLS HILDMDSLTK NNSTLEEKER DISLTLTLSV PSLNASTIMH  240
AGKEFKVAEL TNDDDVYLEA ETMFVGGGDT PLTTIKLFGH TVVVTKPLEL SAGMENVVSH  300
TATRDLLMFS DLHLNPLVSK GSHAYVSSPG VGLCLDGQLV PSETMMGERS RERGSKTLSF  360
NGSSSDSINK MQIAEIDQDS AESVIKTSHP PILNTSEYMK GFVPYKRCVS VKLCL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10113.1	2e-35	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Kalax.0157s0034.1.p