PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0157s0033.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 716aa MW: 79069.9 Da PI: 7.2621 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64.4 | 1.6e-20 | 24 | 79 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q+++Lee+F+++++p+ ++r++L++ l+L rq+k+WFqNrR++ k Kalax.0157s0033.1.p 24 KKHYHRHTAHQIQRLEEAFKECPHPDDKQRQQLSRDLKLAPRQIKFWFQNRRTQLK 79 688999**********************************************9877 PP | |||||||
2 | START | 151.5 | 7.4e-48 | 225 | 448 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....E CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....k 78 +a aa+e+ ++ + +ep+Wv+s+ + +n d + + f ++++ +++e +r+sgvv m++ lv +++++ W e ++ Kalax.0157s0033.1.p 225 IAANAAEEVHRLLQTDEPLWVRSAtdgrQVLNLDMYHKMFRRANNhmnpnSRVESSRDSGVVLMNSIALVGMFMNSN-TWMELFPtivsT 313 577899999*****************9999999999999999888999*****************************.99999999998* PP EEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCE CS START 79 aetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksngh 161 a t++v+s+g gal+lm ae q+lsplvp R+f f+Ry++q ++g w+i+dvS d + + + ss +++lpSg+li++ +ng Kalax.0157s0033.1.p 314 ARTIQVLSPGllgnqnGALHLMHAEVQVLSPLVPtREFFFLRYCQQVQQGLWIIADVSCDFPCNHQ-FSSRHLSHRLPSGCLIQDIPNGF 402 **************************************************************9998.6788889**************** PP EEEEEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 162 skvtwvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206 skv+wve+v+ ++r+p h l+ l++sg a+ga +w atlqr ce+ Kalax.0157s0033.1.p 403 SKVIWVERVEIQDRSPpHLLYTDLISSGFAFGAERWIATLQRVCER 448 ****************9***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.2E-20 | 11 | 75 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.54E-18 | 14 | 79 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.362 | 21 | 81 | IPR001356 | Homeobox domain |
SMART | SM00389 | 8.9E-18 | 23 | 85 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 4.6E-18 | 24 | 79 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.68E-17 | 28 | 81 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 56 | 79 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 45.015 | 215 | 451 | IPR002913 | START domain |
SuperFamily | SSF55961 | 2.75E-30 | 218 | 449 | No hit | No description |
CDD | cd08875 | 1.16E-101 | 219 | 447 | No hit | No description |
SMART | SM00234 | 9.3E-42 | 224 | 448 | IPR002913 | START domain |
Pfam | PF01852 | 1.1E-40 | 225 | 448 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 2.1E-6 | 307 | 418 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 5.63E-19 | 467 | 701 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 716 aa Download sequence Send to blast |
MEDFGVGGRE QAADPNQEEK KKKKKHYHRH TAHQIQRLEE AFKECPHPDD KQRQQLSRDL 60 KLAPRQIKFW FQNRRTQLKG QLERADNCVL RAENDKIRCE NIAMREALRN IICPNCGAPP 120 DLQEDSFFDE RKLRLDNAQL KEELDRVSSI AANYFGRPVT QLPPVQPINI SSLDLSMGRF 180 GGKGMHGPSL NLDLPAGATS SALNNLQLQP VLALSDTQKS IMTTIAANAA EEVHRLLQTD 240 EPLWVRSATD GRQVLNLDMY HKMFRRANNH MNPNSRVESS RDSGVVLMNS IALVGMFMNS 300 NTWMELFPTI VSTARTIQVL SPGLLGNQNG ALHLMHAEVQ VLSPLVPTRE FFFLRYCQQV 360 QQGLWIIADV SCDFPCNHQF SSRHLSHRLP SGCLIQDIPN GFSKVIWVER VEIQDRSPPH 420 LLYTDLISSG FAFGAERWIA TLQRVCERFS FFLDTLTREP GGANLIPDGR KSMMKLGQRM 480 ITNFCATVST ANAHPCTTVA GVSESGIRVT VRKSTNAGQP SDVVLSAATT IWLPVSPQTI 540 FDFFKDEQKR VQWDVLSRGN PIQEMAHISN GSHPGNCISV LQACDSHQGD VVILQETSVD 600 ASGSLLVFCP VELPSIQATM SGQDPSCIPL FPSGFTISPD GRPGEAGTSS SSSHGAMSRS 660 SGSLVTVAFQ ILVSSLPSSK LTSESANTVT NLITTTVRYI KAALNCPETL EAESV* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which acts as positive regulator of drought stress tolerance. Can transactivate CIPK3, NCED3 and ERECTA (PubMed:18451323). Transactivates several cell-wall-loosening protein genes by directly binding to HD motifs in their promoters. These target genes play important roles in coordinating cell-wall extensibility with root development and growth (PubMed:24821957). Transactivates CYP74A/AOS, AOC3, OPR3 and 4CLL5/OPCL1 genes by directly binding to HD motifs in their promoters. These target genes are involved in jasmonate (JA) biosynthesis, and JA signaling affects root architecture by activating auxin signaling, which promotes lateral root formation (PubMed:25752924). Acts as negative regulator of trichome branching (PubMed:16778018, PubMed:24824485). Required for the establishment of giant cell identity on the abaxial side of sepals (PubMed:23095885). May regulate cell differentiation and proliferation during root and shoot meristem development (PubMed:25564655). {ECO:0000269|PubMed:16778018, ECO:0000269|PubMed:18451323, ECO:0000269|PubMed:23095885, ECO:0000269|PubMed:24821957, ECO:0000269|PubMed:24824485, ECO:0000269|PubMed:25564655, ECO:0000269|PubMed:25752924}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017973835.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HDG11 | ||||
Swissprot | Q9FX31 | 0.0 | HDG11_ARATH; Homeobox-leucine zipper protein HDG11 | ||||
TrEMBL | A0A2N9ELU8 | 0.0 | A0A2N9ELU8_FAGSY; Uncharacterized protein | ||||
STRING | XP_010099679.1 | 0.0 | (Morus notabilis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G73360.1 | 0.0 | homeodomain GLABROUS 11 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0157s0033.1.p |