PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0155s0033.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HSF
Protein Properties Length: 416aa    MW: 46401.1 Da    PI: 5.4967
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0155s0033.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind104.77.7e-331142061102
                          HHHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
         HSF_DNA-bind   1 aFlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 
                          +Fl+k+yei+++++++ l++w  +g+sfvv+d + f + +LpkyFkh++f+SF+RQLn+YgF+k++  +         weF++++F++gk
  Kalax.0155s0033.1.p 114 QFLSKIYEIVDNPNTDYLVQWGFDGKSFVVHDANAFCQFILPKYFKHNHFSSFIRQLNTYGFRKIDAAK---------WEFANEQFQRGK 194
                          69***************************************************************9988.........************ PP

                          XXXXXXXXXXXX CS
         HSF_DNA-bind  91 kellekikrkks 102
                          ++ll++ikr++s
  Kalax.0155s0033.1.p 195 RHLLKYIKRRRS 206
                          *********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.4E-34107198IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467857.75E-31111204IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.0E-47111204IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004478.0E-29115204IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-17115138IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-17153165IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-17166178IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MAKLEYELLR EFDRVVAQCD QAQKTRGDSS NTSLINDELG LITANPTGGV SEAGSNASTS  60
HVNNKIPEIV AEMAADVATI GQGTDVVVPS FLPQDQVILS RQMHGKLRDK SVPQFLSKIY  120
EIVDNPNTDY LVQWGFDGKS FVVHDANAFC QFILPKYFKH NHFSSFIRQL NTYGFRKIDA  180
AKWEFANEQF QRGKRHLLKY IKRRRSGNRM RFESEKQDEN LQKALSAKIT NLNKQVEVSH  240
SLISAFEERV QVIELKYKKM ASFLSQTIQN PGLVAELIRG KASVEAKHGG KPSEQKMATV  300
VSDETTKAFS ASNHMLLVNA QTPNQTTEMK TSVSITAPSF GESSSSPTEP QGSAEEMVLN  360
SLESLQDELM NESEACEGIV TEQCLSYFHE LESLIEEESD GWVAYVDAQP IDRKS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-2211120425129Heat shock factor protein 1
5d5v_B5e-2211120425129Heat shock factor protein 1
5d5v_D5e-2211120425129Heat shock factor protein 1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1197203LKYIKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51910.19e-50heat shock transcription factor A7A