PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C2H2

Protein Properties

Length: 424aa MW: 46753.5 Da PI: 8.1447

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0153s0039.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.9	1.7e-05	83	105	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Kalax.0153s0039.1.p 83 FVCEICSKGFQRDQNLQLHRRGH 105 89*******************88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	4.9E-5	82	105	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	5.6E-5	82	105	No hit	No description
PROSITE profile	PS50157	10.887	83	105	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	85	105	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	5.6E-5	155	180	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 424 aa Download sequence Send to blast
MFSSKLPNFS EEAAPASVSS SDKINIAHHH EFGTLNPSSS QIPSTNLDQP VKTKKKRNLP 60 GNPDPDAEVI ALSPKTLLAT NRFVCEICSK GFQRDQNLQL HRRGHNLPWK LKQRSSNDVV 120 RKRAYVCPEP TCVHHHPSRA LGDLTGIKKH FCRKHGEKKW KCEKCCKIYA VQSDWKAHSK 180 TCGTREYRCD CGTLFSRRDS FVTHRAFCDA LAEESARLCA TNANELMFSL DHHHASTATS 240 DFYPTAATQT AASIFSHQQN SPNSLITHPP SFFHPHIHLI HIKPELNQHH LPFFHYSPSS 300 VASAANLSAT ALLQKAATVG AMAASSPLGL TMMGHHTFDV AMTSTWQRTD RLTRDFLGLT 360 ADDDDDDQQE AAQTSRGGKE LLTYSSPEGG VGLGFPGMID GDPPGDGFGL AQAHRHHDAW 420 KHC*

Sequence ? help Back to Top

Protein Sequence Length: 424 aa Download sequence Send to blast

MFSSKLPNFS EEAAPASVSS SDKINIAHHH EFGTLNPSSS QIPSTNLDQP VKTKKKRNLP  60
GNPDPDAEVI ALSPKTLLAT NRFVCEICSK GFQRDQNLQL HRRGHNLPWK LKQRSSNDVV  120
RKRAYVCPEP TCVHHHPSRA LGDLTGIKKH FCRKHGEKKW KCEKCCKIYA VQSDWKAHSK  180
TCGTREYRCD CGTLFSRRDS FVTHRAFCDA LAEESARLCA TNANELMFSL DHHHASTATS  240
DFYPTAATQT AASIFSHQQN SPNSLITHPP SFFHPHIHLI HIKPELNQHH LPFFHYSPSS  300
VASAANLSAT ALLQKAATVG AMAASSPLGL TMMGHHTFDV AMTSTWQRTD RLTRDFLGLT  360
ADDDDDDQQE AAQTSRGGKE LLTYSSPEGG VGLGFPGMID GDPPGDGFGL AQAHRHHDAW  420
KHC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	5e-34	156	224	3	71	Zinc finger protein JACKDAW
5b3h_F	5e-34	156	224	3	71	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023752700.1	1e-138	protein indeterminate-domain 12
Refseq	XP_024164997.1	1e-138	protein indeterminate-domain 12
Swissprot	O22759	1e-117	IDD12_ARATH; Protein indeterminate-domain 12
TrEMBL	A0A2J6M2Y9	1e-137	A0A2J6M2Y9_LACSA; Uncharacterized protein
TrEMBL	A0A2P6PVQ8	1e-137	A0A2P6PVQ8_ROSCH; Putative transcription factor C2H2 family
STRING	POPTR_0002s04880.1	1e-134	(Populus trichocarpa)
STRING	XP_004290634.1	1e-134	(Fragaria vesca)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.1	1e-100	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Kalax.0153s0039.1.p

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]