PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Publication

Basic Information? help Back to Top

TF ID

Kalax.0152s0079.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

bHLH

Protein Properties

Length: 296aa MW: 32832.9 Da PI: 5.4112

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0152s0079.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	48.4	1.7e-15	103	154	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ ++++ + a+i A++Y+k+L+ Kalax.0152s0079.1.p 103 QRMTHIAVERNRRKQMNEYLAVLRTLMPSS---YAQRGNQASIIGGAINYVKELE 154 79**************************...*****************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	5.53E-15	101	158	No hit	No description
SuperFamily	SSF47459	3.4E-18	102	171	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.669	102	153	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.2E-16	103	169	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.2E-12	103	154	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.4E-10	108	159	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MALDAVVFPQ DPFGHNFTFK DYFQGIMEDE LSGGINYNLG VVDNIDTDSW SYDQLGFHKA 60 QEDKLSLLTT APEPSPAKDP PVAARRKRRR TKACKNKEEV ENQRMTHIAV ERNRRKQMNE 120 YLAVLRTLMP SSYAQRGNQA SIIGGAINYV KELEQLLQTL EAQKSTKNPK QQDDHHSPFA 180 NFFTFPQYTA GATAVTPAST TDGDDEVAAE IEVTMVESHA NVKRLAKRCS GQLVKLVAAF 240 QSLSLTFQHL SVSSLDQMVM YSVSVKVEEG CELNSVDEIA AAVNQILRNI DESLG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	85	89	RKRRR
2	85	90	RKRRRT
3	103	114	RMTHIAVERNRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003544814.1	3e-97	transcription factor bHLH96
Refseq	XP_028198704.1	3e-97	transcription factor bHLH96-like
Swissprot	Q9C7T4	3e-82	BH096_ARATH; Transcription factor bHLH96
TrEMBL	A0A445H790	6e-96	A0A445H790_GLYSO; Transcription factor bHLH96
TrEMBL	I1MAX1	6e-96	I1MAX1_SOYBN; Uncharacterized protein
STRING	GLYMA14G35560.1	1e-96	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72210.1	4e-74	bHLH family protein

Link Out ? help Back to Top
Phytozome	Kalax.0152s0079.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]