PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Regulation |

Publication

Basic Information? help Back to Top

TF ID

Kalax.0152s0065.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

M-type_MADS

Protein Properties

Length: 426aa MW: 47455.4 Da PI: 6.1933

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0152s0065.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	67.4	1.4e-21	46	90	1	45
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr en+ rq+t++kR+ngilKKA+EL +LCd+++++++fs+tgk Kalax.0152s0065.1.p 46 KRLENSNSRQTTYAKRKNGILKKANELAILCDIDILLLMFSPTGK 90 689****************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.3E-30	38	97	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	24.292	38	90	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.16E-25	39	131	IPR002100	Transcription factor, MADS-box
CDD	cd00266	5.48E-26	39	118	No hit	No description
PRINTS	PR00404	1.9E-17	40	60	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.1E-19	48	91	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.9E-17	60	75	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.9E-17	75	96	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010152	Biological Process	pollen maturation
GO:0080092	Biological Process	regulation of pollen tube growth
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 426 aa Download sequence Send to blast
MEDIFVRRWR FCDVPDSRVP IDDRFSWAPG LPEQAYIMGR VKLKIKRLEN SNSRQTTYAK 60 RKNGILKKAN ELAILCDIDI LLLMFSPTGK PSLCCGKRGV EEVIAKFAQL TPQERAKRQL 120 EGLEALKKTF KKLDHDVNIQ EFLGASTQTV EGMTEQMVQI RAELEETQQR LSYWSDPSKI 180 ESLDHLGQME ASLGKSLDAI RAHKENLEKQ QLILQETTAQ IQNEMQMPYR VSLEQHYQPL 240 PWIAPNEAPH IPLSEDPNLI PQREIECSGS SSFATYSTYL DLCKRAQSGA FRDDSGFLSE 300 LGRSSPQLIS GQFSFPSYSA NLLASDAKYP ADTNLQNSVH LEPQPTFGTH PAFDPNHSSW 360 ASAAGPFSDT MHSSWASACG PLADVTHGVW GSTSGPCSAT TANSNWASPG SYPVALFHEH 420 YQLPH*

Sequence ? help Back to Top

Protein Sequence Length: 426 aa Download sequence Send to blast

MEDIFVRRWR FCDVPDSRVP IDDRFSWAPG LPEQAYIMGR VKLKIKRLEN SNSRQTTYAK  60
RKNGILKKAN ELAILCDIDI LLLMFSPTGK PSLCCGKRGV EEVIAKFAQL TPQERAKRQL  120
EGLEALKKTF KKLDHDVNIQ EFLGASTQTV EGMTEQMVQI RAELEETQQR LSYWSDPSKI  180
ESLDHLGQME ASLGKSLDAI RAHKENLEKQ QLILQETTAQ IQNEMQMPYR VSLEQHYQPL  240
PWIAPNEAPH IPLSEDPNLI PQREIECSGS SSFATYSTYL DLCKRAQSGA FRDDSGFLSE  300
LGRSSPQLIS GQFSFPSYSA NLLASDAKYP ADTNLQNSVH LEPQPTFGTH PAFDPNHSSW  360
ASAAGPFSDT MHSSWASACG PLADVTHGVW GSTSGPCSAT TANSNWASPG SYPVALFHEH  420
YQLPH*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018846119.1	1e-122	PREDICTED: agamous-like MADS-box protein AGL30 isoform X4
Swissprot	Q1PFA4	7e-95	AGL30_ARATH; Agamous-like MADS-box protein AGL30
TrEMBL	A0A2I4GQF3	1e-120	A0A2I4GQF3_JUGRE; agamous-like MADS-box protein AGL30 isoform X4
STRING	XP_004298422.1	1e-117	(Fragaria vesca)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03060.2	4e-86	AGAMOUS-like 30

Link Out ? help Back to Top
Phytozome	Kalax.0152s0065.1.p

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]