PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0147s0019.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HD-ZIP
Protein Properties Length: 252aa    MW: 28344.2 Da    PI: 9.3267
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0147s0019.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox52.11.1e-1699153256
                          T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          rk+ +++keq   Le+ F+ + ++ ++++e LA++l+L  rqV vWFqNrRa+ k
  Kalax.0147s0019.1.p  99 RKKLRLNKEQSALLEDSFKLQTTLHQKQKEALARQLNLLPRQVEVWFQNRRARTK 153
                          5777899**********************************************98 PP
2HD-ZIP_I/II112.62.5e-3699188190
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          +kk+rl+keq++lLE+sF+ +++L++++K++lar+L+l prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l++en+rL+ke ++L+++
  Kalax.0147s0019.1.p  99 RKKLRLNKEQSALLEDSFKLQTTLHQKQKEALARQLNLLPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCERLTDENDRLRKELRALKQA 188
                          69*************************************************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.18E-1689156IPR009057Homeodomain-like
PROSITE profilePS5007116.08295155IPR001356Homeobox domain
SMARTSM003896.5E-1397159IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.2E-1599153IPR009057Homeodomain-like
PfamPF000467.1E-1499153IPR001356Homeobox domain
CDDcd000868.27E-1499156No hitNo description
PROSITE patternPS000270130153IPR017970Homeobox, conserved site
SMARTSM003408.7E-16155195IPR003106Leucine zipper, homeobox-associated
PfamPF021831.8E-9155187IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MSPPLDGRGL LLGLALRTAP VPPLGLSLSS THDHHIISYD HQPSLTLSLL FPANKLDDYD  60
DDQISSLSNS VNSVKRERAY GVANNINDAY EDVSNNIIRK KLRLNKEQSA LLEDSFKLQT  120
TLHQKQKEAL ARQLNLLPRQ VEVWFQNRRA RTKLKQTEVD CEFLKRCCER LTDENDRLRK  180
ELRALKQASQ HQPFHKTARL SMCPSCSCQS LTDHLRNNPA TTTSAILLTS SRLPKNTCFS  240
TTPSSPSLLS N*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1147155RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009138531.13e-55PREDICTED: homeobox-leucine zipper protein HAT22-like
SwissprotP466045e-55HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLM4DMW68e-54M4DMW6_BRARP; Uncharacterized protein
STRINGBra017853.1-P1e-54(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.17e-56HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]