PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Kalax.0147s0016.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

bHLH

Protein Properties

Length: 310aa MW: 33960.3 Da PI: 5.9413

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0147s0016.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40	7.3e-13	153	200	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h +Er RR+++N++f L l+P++ kK++Ka++L A +Y+k+Lq Kalax.0147s0016.1.p 153 QDHVVAERMRREKLNQRFIALSALVPSL-----KKMDKASVLAGAAKYLKELQ 200 56999*********************.....9****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.831	150	199	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.2E-17	154	212	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.3E-10	154	200	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.71E-13	155	204	No hit	No description
SuperFamily	SSF47459	1.96E-16	155	216	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.7E-14	156	205	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MIFIAQGIDE DSAQIYDHIN LLTDSVTEFK FPSSPAPSWE DEKPLKSCHL PKECNDSASW 60 TDANIQTCES IRKPKLEPVS SSSFSQIISF GNSGKSDESL YAGGLNDIVQ RSGEATYGHI 120 CESNKPALRR QNNYLTSTGS GRTERMITSF GQQDHVVAER MRREKLNQRF IALSALVPSL 180 KKMDKASVLA GAAKYLKELQ ERVKALEKKT AQKEVEPVMS VKKSRLSFTD ETSSTDESSE 240 TEQLSSDCSL PEIEARICGE SVLIKIHCES SPGLAGNILV EVEKLKLAVV SSHTVPFGTH 300 STDITIVAK*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012492038.1	1e-56	PREDICTED: transcription factor bHLH18-like
Refseq	XP_012492039.1	1e-56	PREDICTED: transcription factor bHLH18-like
TrEMBL	A0A0D2QXV7	3e-55	A0A0D2QXV7_GOSRA; Uncharacterized protein
STRING	Gorai.007G228900.1	5e-56	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	6e-35	bHLH family protein

Link Out ? help Back to Top
Phytozome	Kalax.0147s0016.1.p