PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0144s0015.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WOX
Protein Properties Length: 418aa    MW: 46349 Da    PI: 6.7472
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0144s0015.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox68.77.5e-22119178357
                          --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
             Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                          +R+++t+eql++Leel+++ +r+psa+++++++++l    +++ ++V++WFqN++a+e++
  Kalax.0144s0015.1.p 119 SRWNPTPEQLRALEELYRRgTRTPSADQIQHITAQLrrygKIEGKNVFYWFQNHKARERQ 178
                          8*****************99**************************************97 PP
2Wus_type_Homeobox115.42.7e-37117180265
    Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                          +++RW+PtpeQ++ Leely++G+rtP++++iq+ita+L++yGkie+kNVfyWFQN+kaRerqk+
  Kalax.0144s0015.1.p 117 SSSRWNPTPEQLRALEELYRRGTRTPSADQIQHITAQLRRYGKIEGKNVFYWFQNHKARERQKR 180
                          579***********************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003894.7E-6116183IPR001356Homeobox domain
SuperFamilySSF466893.89E-12119184IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.8E-9119178IPR009057Homeodomain-like
PfamPF000461.7E-19119178IPR001356Homeobox domain
CDDcd000861.23E-5120174No hitNo description
PROSITE profilePS5007111.029124179IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048513Biological Processanimal organ development
GO:0099402Biological Processplant organ development
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MWMMGYTNPA TAIPENNGGG GGNDQFGGSS MMGIMSPDSF NGRKLRPLIP RPSSSAIPTH  60
PTCFNHTNCD TASNFFTLNH HMAAAASHHH LVGVEEQAGK RESFMSGHQH HQSVVVSSSR  120
WNPTPEQLRA LEELYRRGTR TPSADQIQHI TAQLRRYGKI EGKNVFYWFQ NHKARERQKR  180
RRQQLENSSS SPNHQQSSHN HLHQDQQPKD QPSGDLSNHN DNKGTTGFEI EQTKLWPAPA  240
NCSTLADQGS VHRTEKATAG LAAAAAAAEC VTDDEWVQFQ DHHNSLQIAS TAATTMLQDT  300
NDTAGEHRRR RTSLNLLLTK NATWDSSHHL SLPTPSAACS FFKPATVHQI SMLNNEDIED  360
ENSDQCSKEG GLTLELFPLQ SNGAMDLIKD DEDEIKATHS TPFQFFEFLP LKNSNAN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.15e-38WUSCHEL related homeobox 1