![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Kalax.0135s0064.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 669aa MW: 71460.6 Da PI: 6.9308 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 50.8 | 3e-16 | 442 | 488 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K++Ka++L +A+eY+k Lq Kalax.0135s0064.1.p 442 VHNLSERRRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIEYLKTLQ 488 6*************************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.18E-17 | 434 | 492 | No hit | No description |
SuperFamily | SSF47459 | 9.68E-21 | 435 | 498 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.8E-21 | 435 | 496 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.349 | 438 | 487 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.8E-14 | 442 | 488 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.6E-18 | 444 | 493 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 669 aa Download sequence Send to blast |
MPLPEFYSLA KGKHRSAQQS AAASPAEPSS LPGSDFVELV WENGQVVMQG QSSRGTKSTD 60 NTASFVDLPP QSSRFRDKGL AKGENSDAGK LLGMMDPVLS DFHMSVPSEL DDHDDMAPWL 120 SYHMDEPVQH NYGSDFFTEL SGVTANNLSN HPTNVSSEPR RSSGVRAMPV SQMNQFPSLH 180 GQCPFPSFRQ KVSNANSNCV NNAAQNLFCG YSAPKRYSSS FGHPSVKVQA QDPVQQLPSS 240 SIMNFSHFSR PAAMVKSSLD SVRVTPELSV AEKLDGKDKG SVLTGVKPAD PSLVASISGQ 300 RVDNAGFKSQ PVVLSAVDGS KLSQSRPVEM SNPADHFGHV GCQDSRTIGA SPKQAVAVAP 360 IGNAAAGNVE KIAEPVVASS VCSGNSVDRA SNDPTYGLKR KYRESEDSEY PSEDAEEESV 420 GIKKAATNRI GSGSKRSRAA EVHNLSERRR RDRINEKMRA LQELIPNCNK VDKASMLDEA 480 IEYLKTLQLQ VQMMSMGSGL CMPPMMLPHA AHLPRFSPMG VGMGMGMEMG YGLGMLDNTP 540 SSPLMQMPSV PGPRFLMAPV PGLGSLNVAP MTNLPMYGFH GQGVPMPMSH APVTSYPAGP 600 PVRPLMDLNT LSAVLPVGNL ASAPTSQPKT PLASTDDHHL PTTSKAVEPS TTKVDVVPVR 660 EATQHNES* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 446 | 451 | ERRRRD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010659764.1 | 1e-150 | PREDICTED: transcription factor PIF3 isoform X1 | ||||
STRING | VIT_14s0060g00260.t01 | 1e-149 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G09530.2 | 4e-65 | phytochrome interacting factor 3 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Kalax.0135s0064.1.p |