PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0114s0001.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WRKY
Protein Properties Length: 619aa    MW: 67821.7 Da    PI: 5.4186
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0114s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.11.1e-30360418259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+
  Kalax.0114s0001.1.p 360 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCWARKQVERSRTDPNMLVITYTSEHNHP 418
                          699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081132.914354420IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.2E-30354420IPR003657WRKY domain
SuperFamilySSF1182904.32E-26357420IPR003657WRKY domain
SMARTSM007742.2E-37359419IPR003657WRKY domain
PfamPF031065.0E-25361418IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 619 aa     Download sequence    Send to blast
MCSSSSFYGL PREGSVLDDR ERHHQGDLAD MIRSISGATT RLYSDSFSSS WTQPYHLATD  60
NDNIVTDHQV PLTATAAAQD QNDPLFTFYH DQQQQPGACL VRPSSHLDVG YFGADPFSST  120
MIRDPLPRED GMMMMMNCSS NDFLYYSMSA SNYTLATHNN LLPATASSTM TLMIMKSEGI  180
LEDASSESGS HLLCSSSATK DISSTIGDLG LQAEPTQQCQ EPAAATSSII SMPNCNVIPR  240
MHHISPDIVS QQASAPAPPS IDNNELPISP QNKETLLLKP APVSSSDFAV FGGSGDIDSS  300
SNRMLDQTRT AENICGHLTE TISSPRNPAV KRRKNLTKKV VCVPAPAPAN SRSSGEVVPS  360
DLWAWRKYGQ KPIKGSPYPR GYYRCSSSKG CWARKQVERS RTDPNMLVIT YTSEHNHPWP  420
TQRNALAGST RSQPSKNKSS TPGSNTTSQL TTGAIQQQQH LIEHGHALHS KCNVEESEKQ  480
RGDEPADANK IMITSQSKDE KEVTAISDTF IKEELGDADH VGDEDDTNNQ LDRNDGCDAN  540
QLGATYNHYD SNKHWCSQKI FRPTIGLHED GNYQQTPVEQ SQDDFFAELG GISGNDAFSY  600
LDWPSLERKT TTRTLHDG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-23337421580Disease resistance protein RRS1
5w3x_D2e-23337421580Disease resistance protein RRS1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.12e-63WRKY DNA-binding protein 35