PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0112s0004.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family TALE
Protein Properties Length: 533aa    MW: 59114.7 Da    PI: 5.8373
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0112s0004.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox277.8e-094554931854
                          HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          +F++  ++yp+ +e+  LA k gLt +qV++WF N R +
  Kalax.0112s0004.2.p 455 MFQNflHPYPKDSEKHMLAVKSGLTRSQVSNWFINARVR 493
                          5887779******************************88 PP
2BELL60.44.2e-20326395272
                 BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                          ++e++ kk +L  ll++Vd+ Y+q+   ++ v+s+F+  +g ++ +++t++ l+++S+ +++Lk++i+ qi
  Kalax.0112s0004.2.p 326 KREVRDKKKQLTALLNMVDEGYNQCLRAVHDVVSAFHPLTGSDP-EVHTRFVLQTTSFLYKSLKERISAQI 395
                          6899****************************************.************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.6E-14259393IPR006563POX domain
PfamPF075263.0E-20267392IPR006563POX domain
PROSITE profilePS5007111.191434497IPR001356Homeobox domain
CDDcd000865.33E-11437498No hitNo description
SMARTSM003894.0E-6437501IPR001356Homeobox domain
SuperFamilySSF466891.63E-15439505IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.9E-26440503IPR009057Homeodomain-like
PfamPF059203.1E-15454493IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009640Biological Processphotomorphogenesis
GO:0010073Biological Processmeristem maintenance
GO:0010227Biological Processfloral organ abscission
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010371Biological Processregulation of gibberellin biosynthetic process
GO:0090470Biological Processshoot organ boundary specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MHFSSYKPFQ ENEMFTNTPL ERPGADNNTS LGISATYPDH LPCAFDLNNQ QNHIMSGPPV  60
FSAIQGEPID DLLASAHIST HPVYIDPDAM LAGPSLDGDN VSEEQFEEGT LVSATALASL  120
LASRGCFYQN VDDPTVYTGR AFAYNYEPGT SSVDRSCNNQ LHGDTGDGVW MQPPNPIFYQ  180
ESWAATYPCN NLAMFNNELS LSLATSQPSR ICQSFIQDQC SELSRSGVTN IHDSGRGSEQ  240
SSSPMTNDWS LTYPSCSTSQ PSLASSGSSY LKAVQQLLAE LSRFALENVD LGSYSGGSPG  300
NVASISGEYS KSDGGESQEA TLSPQKREVR DKKKQLTALL NMVDEGYNQC LRAVHDVVSA  360
FHPLTGSDPE VHTRFVLQTT SFLYKSLKER ISAQILNLKA ADLQSDSIQE QERAFESSFI  420
QKQWALQQLK PKEHQLWRPQ RGLPERSVSV LRAWMFQNFL HPYPKDSEKH MLAVKSGLTR  480
SQVSNWFINA RVRLWKPMIE EMYAEINRRK AHRKGHSVAG HSSMGNQRFQ GE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A8e-15443501563Homeobox protein Meis2
3k2a_B8e-15443501563Homeobox protein Meis2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.12e-89homeobox gene 1