PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0109s0104.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family TALE
Protein Properties Length: 401aa    MW: 44802.4 Da    PI: 6.0627
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0109s0104.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.59.4e-08331376954
                          HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox   9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          ++ql++  +   k +yp++e++++L +++gL+ +q+ +WF N+R +
  Kalax.0109s0104.1.p 331 TSQLKAWWKSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 376
                          567777777777889*****************************87 PP
2ELK29.22e-10297318122
                  ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                          ELKh+L+++Y+ +++++++E++
  Kalax.0109s0104.1.p 297 ELKHELKNGYKDKIVDIREEIL 318
                          9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012553.3E-19134178IPR005540KNOX1
PfamPF037905.3E-17136177IPR005540KNOX1
SMARTSM012563.0E-25186241IPR005541KNOX2
PfamPF037912.0E-18192240IPR005541KNOX2
SMARTSM011886.6E-4297318IPR005539ELK domain
PROSITE profilePS512139.69297317IPR005539ELK domain
PfamPF037893.2E-5297318IPR005539ELK domain
PROSITE profilePS5007111.645317380IPR001356Homeobox domain
SuperFamilySSF466891.54E-15319385IPR009057Homeodomain-like
SMARTSM003891.8E-10319384IPR001356Homeobox domain
CDDcd000865.67E-11320379No hitNo description
Gene3DG3DSA:1.10.10.609.7E-25324382IPR009057Homeodomain-like
PfamPF059208.4E-18337376IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MAYQNHPAHP MELQHLADQQ LPEGSGGGGG GSGLRGIYST REDKISEASG GGAPTWLNSA  60
VVQQHDNRYT ESNFLHLQTN SGSSNSPTAA NRFMTPSDDS DKYRRGGSNR VNDRYGKDED  120
VANNEYEAEN WENARYKAEV LSHPLYEQLL SAHVSCLRIA TPVDQLPRID AQLAQSQSVV  180
AKYLAVGAGN LDDKELDQFM TNYVLLLCSF KEQLQQHVRV HAMEAVMACW QLEQSLQTLT  240
GVSPGEGTGE TMSDDEDNHM DSNTLFDGSL DSPDSMGFGP LILTDSERSL MERVRQELKH  300
ELKNGYKDKI VDIREEILRK RRAGKLPGDT TSQLKAWWKS HSKWPYPTEE DKARLVQETG  360
LQLKQINNWF INQRKRNWHS NSSSSNSSKS KRKSNAGETS *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU2727890.0EU272789.1 Kalanchoe x houghtonii class 1 knox protein (KN3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010656543.10.0PREDICTED: homeobox protein knotted-1-like 13 isoform X2
SwissprotP480011e-166KNAT4_ARATH; Homeobox protein knotted-1-like 4
TrEMBLB1P3810.0B1P381_9MAGN; Class 1 knox protein
STRINGVIT_11s0118g00800.t011e-178(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.11e-152KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]