PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0105s0016.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 295aa    MW: 32490.3 Da    PI: 6.5035
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0105s0016.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.57.6e-141461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+W ++Ed+ l  +++  G g+Wk+ +++ g++R++k+c++rw +yl
  Kalax.0105s0016.1.p 14 KGAWCAQEDQALTAYITANGEGSWKSLPQKAGLNRCGKSCRLRWINYL 61
                         799*******************************************97 PP
2Myb_DNA-binding58.51.5e-1867111147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg +T++Ed++l++++++lG++ W++Iar+++ gRt++++k++w++ 
  Kalax.0105s0016.1.p  67 RGGFTQDEDDILIKLHTLLGNR-WALIARRLP-GRTDNEIKNYWNTT 111
                          788*******************.*********.************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.984961IPR017930Myb domain
SuperFamilySSF466897.65E-2811108IPR009057Homeodomain-like
SMARTSM007171.1E-81363IPR001005SANT/Myb domain
PfamPF002493.8E-111461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-201568IPR009057Homeodomain-like
CDDcd001678.84E-61661No hitNo description
PROSITE profilePS5129426.61862116IPR017930Myb domain
SMARTSM007175.1E-1766114IPR001005SANT/Myb domain
PfamPF002491.2E-1567111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.1E-2669116IPR009057Homeodomain-like
CDDcd001674.04E-1370112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MGRTPCCAKV GVNKGAWCAQ EDQALTAYIT ANGEGSWKSL PQKAGLNRCG KSCRLRWINY  60
LKPGIKRGGF TQDEDDILIK LHTLLGNRWA LIARRLPGRT DNEIKNYWNT TLSKKVKKTT  120
TTNNNTVTNN GQPPSPDPQN CHLEFAIKRP SRSIDHHRND GDDHHVVHYV KAFRCKKVVL  180
PASLLPAPLS EEEEEEAGGH QLMSNNGGSV SNNNVESKQQ QQQQQDDDNM IRSDLLIWED  240
VVAGGGDGLM SGGSSSISWA SFSTEDSADL LVSMDCCEDM PDWSALEKIY GSFS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-271211625128MYB TRANSFORMING PROTEIN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGXP_009340436.14e-63(Pyrus x bretschneideri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.14e-55myb domain protein 4