PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Kalax.0103s0064.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C2H2

Protein Properties

Length: 220aa MW: 23499.1 Da PI: 8.1715

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0103s0064.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.6	0.0002	74	96	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C+ksF + L H+ +H Kalax.0103s0064.1.p 74 HKCSVCNKSFGSYQALGGHMASH 96 79******************999 PP
2	zf-C2H2	14.7	8.8e-05	133	155	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+ksF++ L H r+H Kalax.0103s0064.1.p 133 HECSICHKSFPTGQALGGHKRRH 155 78*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.6E-4	72	97	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.89E-7	73	96	No hit	No description
PROSITE profile	PS50157	9.432	74	101	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0024	74	96	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	1.7E-13	74	98	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	76	96	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.89E-7	128	155	No hit	No description
PROSITE profile	PS50157	9.473	133	155	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.039	133	155	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	2.8E-13	133	157	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	135	155	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence Send to blast
MALEALNSPA AFARFQESND HSWPAGDKRS RLVDQAGCST EEEHLALCLI SLARGGPNKK 60 MRTGPVSADP SAPHKCSVCN KSFGSYQALG GHMASHKRAA AAAATAENYK DDHSKKQLHS 120 NKPASSVKAT ADHECSICHK SFPTGQALGG HKRRHYEGIL GNHNSVKSTS TTTASIYEGV 180 QSRKNFDLNI PMPDGVVEDE VQSPHLANKS SLESQQLPE*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2Z6MV19	1e-46	A0A2Z6MV19_TRISU; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27730.1	9e-34	salt tolerance zinc finger

Link Out ? help Back to Top
Phytozome	Kalax.0103s0064.1.p