PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0103s0043.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 425aa    MW: 46176.2 Da    PI: 6.4528
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0103s0043.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH322.2e-10271319355
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +h+ +Er RR++i +++  L+el+P +    +k   Ka +L + ++Y++sLq
  Kalax.0103s0043.1.p 271 NSHSLAERVRREKISERMKLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 319
                          58**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.37E-17266335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.98E-11266323No hitNo description
PROSITE profilePS5088815.586268318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.8E-17269336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-7271319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-10274324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MGVGGDGEVD LGFHQNSNKG FMSCSTSGMN TNPVPNKAAG TAMSSVPMFK SSAGSDPFFG  60
THWDPLLAIN HSENFGGGSS MVSHCGYANP PYPIHNQGMS STHLAQYPSS DSTQVDLPKI  120
QHFGSGNFSD MAGLYGLPAL GATGTSSCYQ NYLPNQEVVT HRHHSTDGAR SQDDCQVSEE  180
RALEASPNGK RRRRSIESAS ELNSNKVTEG EQQKDMSEGS FDQPGEPDDK KQSQILKNKP  240
SSKQAKNNSP TEDNTKDTYI HVRARRGQAT NSHSLAERVR REKISERMKL LQELVPGCNK  300
ITGKAVMLDE IINYVQSLQQ QVEFLSMKLA TVNPELNIDI ERMLSKDILQ SRGENTVMLG  360
ISPGIGNSHP YPLAVLQSGM QNSATEYHHM PQNGWNNELQ SLLQMGFCSN PAVDNQGLDG  420
CSKP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021828015.11e-154transcription factor bHLH74 isoform X2
TrEMBLA0A498JCK61e-151A0A498JCK6_MALDO; Uncharacterized protein
STRINGXP_008357997.11e-152(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.13e-78bHLH family protein