PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Kalax.0101s0023.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

bHLH

Protein Properties

Length: 367aa MW: 40729.1 Da PI: 7.0233

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0101s0023.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	45.8	1.1e-14	158	209	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++ + ++ Lr+llP+a ++++ + a+i+ A++Y+k+L+ Kalax.0101s0023.1.p 158 QRMTHIAIERNRRRQMSDYLSVLRSLLPPA---YAERGDQASIVGGAIDYVKNLE 209 79**************************...*****************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.16E-11	156	213	No hit	No description
SuperFamily	SSF47459	9.42E-17	157	223	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.713	157	208	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-13	158	222	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.0E-11	158	209	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.1E-10	163	214	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence Send to blast
MEEGCCGGGE GGGPINLSAS FDGGVEPSAR SDFLTASLGL DDRMPFLRML HALDPSITRS 60 LLKKNPTETE TQILPVDCCI THDTPELHSP VMSEGKNPTQ VSPDGTLEER GELNSVSECR 120 QDSSSDRTHQ SQLSCGKMRK PRKHAKVVVE NKKDVEKQRM THIAIERNRR RQMSDYLSVL 180 RSLLPPAYAE RGDQASIVGG AIDYVKNLEQ LLQSLQAQKR QRKVDEKRNR CSNSMPLSPE 240 TSDGISTSSS TASLDEDCDM NSPLEKKADI NIRVVQTHVN LHIGCDDMKQ SELIKLLIAL 300 ERLRLKILHL NITSIHKSSF YSLSLNVEDE CKLRSTEEIS SSIEQLLNSI NIYNGRRSSV 360 TKKLNT*

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence Send to blast

MEEGCCGGGE GGGPINLSAS FDGGVEPSAR SDFLTASLGL DDRMPFLRML HALDPSITRS  60
LLKKNPTETE TQILPVDCCI THDTPELHSP VMSEGKNPTQ VSPDGTLEER GELNSVSECR  120
QDSSSDRTHQ SQLSCGKMRK PRKHAKVVVE NKKDVEKQRM THIAIERNRR RQMSDYLSVL  180
RSLLPPAYAE RGDQASIVGG AIDYVKNLEQ LLQSLQAQKR QRKVDEKRNR CSNSMPLSPE  240
TSDGISTSSS TASLDEDCDM NSPLEKKADI NIRVVQTHVN LHIGCDDMKQ SELIKLLIAL  300
ERLRLKILHL NITSIHKSSF YSLSLNVEDE CKLRSTEEIS SSIEQLLNSI NIYNGRRSSV  360
TKKLNT*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	158	169	RMTHIAIERNRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46810.1	2e-49	bHLH family protein

Link Out ? help Back to Top
Phytozome	Kalax.0101s0023.1.p