PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0099s0031.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NAC
Protein Properties Length: 511aa    MW: 57073.7 Da    PI: 4.6961
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0099s0031.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.31.2e-52201462128
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                          ppGfrFhPtdeel+ +yLk+kv g++l+l ++i+e+d+yk++P+dLp + k++++++ w+fFs+rd+ky++g r+nrat++gyWkatgkd
  Kalax.0099s0031.1.p  20 PPGFRFHPTDEELILYYLKRKVCGRRLKL-DMISETDVYKWDPEDLPgQsKLQTGDRLWFFFSPRDRKYPNGARSNRATHHGYWKATGKD 108
                          8****************************.99**************96358899999********************************* PP

                  NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +++++ +++ vglkktLvfy+grap+g++t+Wvmhey+l
  Kalax.0099s0031.1.p 109 RRITC-NSRPVGLKKTLVFYRGRAPTGTRTNWVMHEYTL 146
                          *****.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.05E-5716169IPR003441NAC domain
PROSITE profilePS5100554.23719169IPR003441NAC domain
PfamPF023659.8E-2820146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MKMPSSSSRC IGGKKKQVWP PGFRFHPTDE ELILYYLKRK VCGRRLKLDM ISETDVYKWD  60
PEDLPGQSKL QTGDRLWFFF SPRDRKYPNG ARSNRATHHG YWKATGKDRR ITCNSRPVGL  120
KKTLVFYRGR APTGTRTNWV MHEYTLDEEE LKRCQNVGVY FALYKVYMKS GPGPKNGEQY  180
GAPFKEEDWA DEECTEVGSN AVEVANLSET LNMPMDGMIR IGDNFIGVVD EVEPWNSSAE  240
SRALLQLQSA DCFHQDPVVH PVSQRSDMGC SFDYSQPVAS HVVEAPDISS GLNVDELNNF  300
LADGDFLEAN DLLGPEPITW GDDNPLENQW VDNTYDELGE WDLFDDASIF LHDTGASDLF  360
NGDDGMLNNF EYQPQLNDAS NVTSELWVHE DPNINEHLSV QPGSIIGGNT SISTLQDNQN  420
HNGSTSCPQN RVTSALWAFV ESIPTTPASA SESILLNKAF ERVSSFRRLG AMNSLTVGDT  480
KESAKHSKSR GIILLSIVGA VCAMIWVLMA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A5e-472014821147NAC domain-containing protein 19
3swm_B5e-472014821147NAC domain-containing protein 19
3swm_C5e-472014821147NAC domain-containing protein 19
3swm_D5e-472014821147NAC domain-containing protein 19
3swp_A5e-472014821147NAC domain-containing protein 19
3swp_B5e-472014821147NAC domain-containing protein 19
3swp_C5e-472014821147NAC domain-containing protein 19
3swp_D5e-472014821147NAC domain-containing protein 19
3ulx_A5e-472014616140Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018848078.11e-156PREDICTED: NAC domain-containing protein 17-like isoform X1
RefseqXP_023922687.11e-156NAC domain-containing protein 17-like
TrEMBLA0A2N9H1E91e-160A0A2N9H1E9_FAGSY; Uncharacterized protein
STRINGVIT_18s0001g01820.t011e-155(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34190.11e-120NAC domain containing protein 17