 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Kalax.0095s0091.4.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
|
| Family |
MIKC_MADS |
| Protein Properties |
Length: 226aa MW: 25366.9 Da PI: 7.9994 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Kalax.0095s0091.4.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 85.6 | 2.9e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
+ri+n + rqvtfskRr+g+lKKA+ELS+LCd++v v+ifsstgkly+y+s
Kalax.0095s0091.4.p 9 ERIDNITSRQVTFSKRRKGLLKKAKELSILCDVQVGVMIFSSTGKLYDYAS 59
69***********************************************86 PP
|
| 2 | K-box | 75.6 | 1.3e-25 | 82 | 171 | 9 | 98 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98
+++++ +++++e+a L ++++Lq +R++ Ge+L+ L+++eLq+Le+qLe lk iR kK+e+l+++ieel+++ +q+en +L+++
Kalax.0095s0091.4.p 82 NSNSDVKYWKNEAATLLHQLQSLQDDHRKVFGEQLSGLTIRELQHLENQLEMNLKCIRMKKDEILIAEIEELRQQGSLIQQENLDLQNQA 171
578899********************************************************************************9885 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50066 | 29.871 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
| SMART | SM00432 | 1.2E-37 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 2.59E-37 | 2 | 78 | No hit | No description |
| SuperFamily | SSF55455 | 3.4E-29 | 2 | 90 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 3.6E-26 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
| PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 4.4E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 3.6E-26 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 3.6E-26 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF01486 | 9.8E-23 | 84 | 170 | IPR002487 | Transcription factor, K-box |
| PROSITE profile | PS51297 | 13.054 | 87 | 178 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 226 aa
Download sequence Send
to blast |
MGRGKIVIER IDNITSRQVT FSKRRKGLLK KAKELSILCD VQVGVMIFSS TGKLYDYASN 60
GSIKTTIEQY NRVKGDKLHL ANSNSDVKYW KNEAATLLHQ LQSLQDDHRK VFGEQLSGLT 120
IRELQHLENQ LEMNLKCIRM KKDEILIAEI EELRQQGSLI QQENLDLQNQ AMCHITNGEM 180
TAALHTDALR CENGTPVQVQ LQLSQPQPQS TDSASGNISL GLHLN*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor. |
