PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0092s0087.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WRKY
Protein Properties Length: 357aa    MW: 40466.9 Da    PI: 5.4298
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0092s0087.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.66.1e-29137196258
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                          dDg++WrKYGqK++ g+++prsYYrCt +   +C+++k+v+rs+edp+v+eitY+g+H++
  Kalax.0092s0087.1.p 137 DDGFSWRKYGQKDILGARYPRSYYRCTNRnikHCWATKQVQRSDEDPTVFEITYKGKHTC 196
                          8**************************998889*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081121.39131194IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.3E-27133196IPR003657WRKY domain
SuperFamilySSF1182908.5E-25135196IPR003657WRKY domain
SMARTSM007746.9E-38136198IPR003657WRKY domain
PfamPF031063.1E-26137196IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MENWEQQTLI NELTQGMELA KQLRFHVGPS STTETREYLV QKILSSYDKA LLILNWSESA  60
SNGQGRRPQP NVAPNLLPES PCSFDGSPRS EPCDKGIKDQ LQQQEHLTDL SKKRKPQAKW  120
TDHVRIYCES GLEGPHDDGF SWRKYGQKDI LGARYPRSYY RCTNRNIKHC WATKQVQRSD  180
EDPTVFEITY KGKHTCLPEC DPNLEPEQQD REVQRLNNNA NDHKQSQADD FLQNLKNNLK  240
VNTEDMSNKE MPCHLPLTSA STEITMNGNY SPANFDGSLM QIFTSPAMSA SNSLPVSPFR  300
QYSSFGRGFG TVCCSESDRS DMFSSNANSP YLDLDFTPDP ADPDLTFPFN VPGFFH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A5e-17137196968OsWRKY45
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011026911.11e-105PREDICTED: probable WRKY transcription factor 41
TrEMBLA0A3R5WE401e-109A0A3R5WE40_PAELC; WRKY protein
STRINGPOPTR_0003s13840.11e-101(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.15e-65WRKY family protein