PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Kalax.0088s0030.9.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

Nin-like

Protein Properties

Length: 955aa MW: 105354 Da PI: 5.412

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0088s0030.9.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.2	7.9e-29	602	652	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ Kalax.0088s0030.9.p 602 EKSVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 652 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.574	586	672	IPR003035	RWP-RK domain
Pfam	PF02042	3.9E-26	605	652	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.7E-19	849	937	No hit	No description
Gene3D	G3DSA:3.10.20.240	6.9E-20	851	933	No hit	No description
SMART	SM00666	1.9E-15	854	936	IPR000270	PB1 domain
PROSITE profile	PS51745	16.851	854	936	IPR000270	PB1 domain
Pfam	PF00564	1.2E-10	855	933	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 955 aa Download sequence Send to blast
MEPSRFKDKG MEYFPSRRVS NENVNDGIQS VVMDDAFSDM CEITNFDSFT GWGSTLVPDQ 60 IYAPYELVSS LHPTPASYQP FDALNFSEQN IICITPTNGS AGPSSVVVSP FGSEDKLLSN 120 QTGNGQFQCN LASSDENDYG IEPAPIATRS SCHSSNERYL IEKPLGQSLD EKMLRVLSLF 180 KESSGAGILA QVWVPVKHGD HFILTTSDQP YLLDNMLAGY REVSRGYTFS TREAPGSFPG 240 LPGRVFISKV PEWTSNVIYY NTTEYLRVKH AVDHEVRGSI AFPVFNPSEN SCCAVLELVT 300 VKEKPNFDWE MKTVCEALET VSLKTTAPPR LHSQSLSKNQ RDALAEIADV LRTVCHAHRL 360 PLALTWIPCS YTEGLREEFI RLHVEANTER RGKQILCIEE SACFANDKSM EGFVQACCEN 420 YLEGKQGVAG KALQSNQPFF LPDVKCYDIS EYPLVQHARK FGLSAAVAIR LRSTFTDVDD 480 YILELFLPVT MTGSYEQQLL LNSLSSTMQK VCKTLRTVSD AELAETGNSK LLRDGICQEF 540 EHTANPGMSS QLSSSTSDTS SFHKLPTDTS KSCIGKREFE DCWQEDVNAQ GRHFEKKRST 600 VEKSVSLSVL QQYFSGSLKD AAKSIGVCPT TLKRICRQHG ISRWPSRKIN KVNRSLRKLQ 660 TVLDSVQGVE GGLKFDPTTG GLVPASSLVQ DLDKGQILHH GLACNFAAQE MVSTAPSIEL 720 LAIKLEENDC GMGGSHLRAV QNISFKNTGQ GALHKSSFPS ESFSDDAKSN GMDVMANCSL 780 SKQVPRVESL ESHFLSQNSS SMIDEGNNEH NQPASSSMTD SSNGSLLNGS SSTSQSHEDT 840 YIRKKVSRGN TGSKITVKAT FKEDTIRFKF DPFAGCFQLY EEVATRFKLQ VGTFKLKYLD 900 DEDELVVLES ELDWQECLEV IESVSSPSVK FTVLEIPCGM GSSGSSNCFL MRGT*

Sequence ? help Back to Top

Protein Sequence Length: 955 aa Download sequence Send to blast

MEPSRFKDKG MEYFPSRRVS NENVNDGIQS VVMDDAFSDM CEITNFDSFT GWGSTLVPDQ  60
IYAPYELVSS LHPTPASYQP FDALNFSEQN IICITPTNGS AGPSSVVVSP FGSEDKLLSN  120
QTGNGQFQCN LASSDENDYG IEPAPIATRS SCHSSNERYL IEKPLGQSLD EKMLRVLSLF  180
KESSGAGILA QVWVPVKHGD HFILTTSDQP YLLDNMLAGY REVSRGYTFS TREAPGSFPG  240
LPGRVFISKV PEWTSNVIYY NTTEYLRVKH AVDHEVRGSI AFPVFNPSEN SCCAVLELVT  300
VKEKPNFDWE MKTVCEALET VSLKTTAPPR LHSQSLSKNQ RDALAEIADV LRTVCHAHRL  360
PLALTWIPCS YTEGLREEFI RLHVEANTER RGKQILCIEE SACFANDKSM EGFVQACCEN  420
YLEGKQGVAG KALQSNQPFF LPDVKCYDIS EYPLVQHARK FGLSAAVAIR LRSTFTDVDD  480
YILELFLPVT MTGSYEQQLL LNSLSSTMQK VCKTLRTVSD AELAETGNSK LLRDGICQEF  540
EHTANPGMSS QLSSSTSDTS SFHKLPTDTS KSCIGKREFE DCWQEDVNAQ GRHFEKKRST  600
VEKSVSLSVL QQYFSGSLKD AAKSIGVCPT TLKRICRQHG ISRWPSRKIN KVNRSLRKLQ  660
TVLDSVQGVE GGLKFDPTTG GLVPASSLVQ DLDKGQILHH GLACNFAAQE MVSTAPSIEL  720
LAIKLEENDC GMGGSHLRAV QNISFKNTGQ GALHKSSFPS ESFSDDAKSN GMDVMANCSL  780
SKQVPRVESL ESHFLSQNSS SMIDEGNNEH NQPASSSMTD SSNGSLLNGS SSTSQSHEDT  840
YIRKKVSRGN TGSKITVKAT FKEDTIRFKF DPFAGCFQLY EEVATRFKLQ VGTFKLKYLD  900
DEDELVVLES ELDWQECLEV IESVSSPSVK FTVLEIPCGM GSSGSSNCFL MRGT*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021907023.1	0.0	protein NLP9-like
TrEMBL	A0A061ER47	0.0	A0A061ER47_THECC; Plant regulator RWP-RK family protein, putative isoform 1
STRING	evm.model.supercontig_9.328	0.0	(Carica papaya)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Kalax.0088s0030.9.p