PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0086s0023.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

HD-ZIP

Protein Properties

Length: 276aa MW: 29986.1 Da PI: 8.3395

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0086s0023.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.9	7.4e-18	123	177	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++ +q Lee F+++++++ ++++ LAk+lgL rqV vWFqNrRa+ k Kalax.0086s0023.1.p 123 RKKLRLSVDQSILLEETFKEHSTLNPRQKQALAKQLGLRARQVEVWFQNRRARTK 177 677889999********************************************98 PP
2	HD-ZIP_I/II	113.9	1e-36	123	212	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rls +q+ lLEe+F+e+++L+p++K++la++Lgl++rqv+vWFqnrRARtk+kq+E ++e++kr++++l+++ +rL+kev+eLr + Kalax.0086s0023.1.p 123 RKKLRLSVDQSILLEETFKEHSTLNPRQKQALAKQLGLRARQVEVWFQNRRARTKLKQTEAECEFMKRNCESLMDRVRRLTKEVHELR-A 211 69*************************************************************************************9.5 PP HD-ZIP_I/II 91 l 91 l Kalax.0086s0023.1.p 212 L 212 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.5E-17	100	180	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.42E-17	109	180	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.989	119	179	IPR001356	Homeobox domain
SMART	SM00389	3.6E-14	121	183	IPR001356	Homeobox domain
Pfam	PF00046	3.4E-15	123	177	IPR001356	Homeobox domain
CDD	cd00086	2.33E-15	123	180	No hit	No description
PRINTS	PR00031	1.1E-5	150	159	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	154	177	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.1E-5	159	175	IPR000047	Helix-turn-helix motif
SMART	SM00340	2.2E-16	179	222	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
MSQVAALGNM VMMSSSEFGS ALDLNLSLNL GAPPHLRPVE PHSFSPNPVL SLAPALSLDK 60 KVVDLTKPPT SGDQGEDGGS PNSTWSTTLT GKRAHPEEEP NLVPGRESPP RGGSDEEDGE 120 NARKKLRLSV DQSILLEETF KEHSTLNPRQ KQALAKQLGL RARQVEVWFQ NRRARTKLKQ 180 TEAECEFMKR NCESLMDRVR RLTKEVHELR ALKVAPQYYM QMPPATTLTL CPSCERVGIP 240 APPPAAAPVN GGRVAGPVPD NPWASGAGQM NLSLF*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	171	179	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the negative regulation of cell elongation and specific cell proliferation processes such as lateral root formation and secondary growth of the vascular system. Acts as mediator of the red/far-red light effects on leaf cell expansion in the shading response. Binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. Negatively regulates its own expression. {ECO:0000269\|PubMed:10477292, ECO:0000269\|PubMed:11260495, ECO:0000269\|PubMed:8449400}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Rapidly and strongly induced by lowering the ratio of red to far-red light. {ECO:0000269\|PubMed:8106086}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018825158.1	5e-78	PREDICTED: homeobox-leucine zipper protein HAT4-like
Swissprot	Q05466	4e-74	HAT4_ARATH; Homeobox-leucine zipper protein HAT4
TrEMBL	A0A2I4F0I2	1e-76	A0A2I4F0I2_JUGRE; homeobox-leucine zipper protein HAT4-like
STRING	XP_009338549.1	4e-75	(Pyrus x bretschneideri)
STRING	XP_009368917.1	4e-75	(Pyrus x bretschneideri)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16780.1	3e-70	homeobox protein 2

Link Out ? help Back to Top
Phytozome	Kalax.0086s0023.1.p

Publications ? help Back to Top
Carabelli M,Turchi L,Ruzza V,Morelli G,Ruberti I Homeodomain-Leucine Zipper II family of transcription factors to the limelight: central regulators of plant development. Plant Signal Behav, 2014. [PMID:23838958] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Francisco M, et al. Genome Wide Association Mapping in Arabidopsis thaliana Identifies Novel Genes Involved in Linking Allyl Glucosinolate to Altered Biomass and Defense. Front Plant Sci, 2016. 7: p. 1010 [PMID:27462337] Müller-Moulé P, et al. YUCCA auxin biosynthetic genes are required for Arabidopsis shade avoidance. PeerJ, 2016. 4: p. e2574 [PMID:27761349] Ivarson E, et al. Effects of Overexpression of WRI1 and Hemoglobin Genes on the Seed Oil Content of Lepidium campestre. Front Plant Sci, 2016. 7: p. 2032 [PMID:28119714] Kasulin L, et al. A single haplotype hyposensitive to light and requiring strong vernalization dominates Arabidopsis thaliana populations in Patagonia, Argentina. Mol. Ecol., 2017. 26(13): p. 3389-3404 [PMID:28316114] Singh M,Gupta A,Singh D,Khurana JP,Laxmi A Arabidopsis RSS1 Mediates Cross-Talk Between Glucose and Light Signaling During Hypocotyl Elongation Growth. Sci Rep, 2017. 7(1): p. 16101 [PMID:29170398]