PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0085s0084.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NF-YC
Protein Properties Length: 143aa    MW: 15471.8 Da    PI: 9.7662
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0085s0084.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC482.8e-1514932098
                NF-YC 20 elPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivpr 98
                         ++P  r+kki+k d+d++++ aea  l+s + +lf+  l+ rs   a e+kr+ +k   + +av+r   + dfl+d  p 
  Kalax.0085s0084.1.p 14 SFPTGRVKKIMKIDKDINKVNAEALHLISCSTDLFLQFLAERSAAVATEKKRKIVKPEHLRTAVKRHLpTSDFLLDSLPA 93
                         79***************************************************************975389*****9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471138.22E-17992IPR009072Histone-fold
Gene3DG3DSA:1.10.20.107.3E-201278IPR009072Histone-fold
PfamPF008086.4E-181477IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MAENDSDDHP ITPSFPTGRV KKIMKIDKDI NKVNAEALHL ISCSTDLFLQ FLAERSAAVA  60
TEKKRKIVKP EHLRTAVKRH LPTSDFLLDS LPAPQSLPVV DGPAAEIRAR PAEVKPAPAG  120
TRRIDQIFAK SGKEAAGSII ET*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021280097.12e-54negative cofactor 2 complex subunit alpha
RefseqXP_022735299.12e-54nuclear transcription factor Y subunit gamma
TrEMBLA0A1R3GQV76e-56A0A1R3GQV7_COCAP; Transcription factor CBF/NF-Y/archaeal histone
TrEMBLA0A1R3J0137e-56A0A1R3J013_9ROSI; Transcription factor CBF/NF-Y/archaeal histone
STRINGXP_010044803.15e-52(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43250.11e-32nuclear factor Y, subunit C13