PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0085s0059.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 364aa    MW: 40324.9 Da    PI: 7.3254
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0085s0059.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.17.1e-171461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+eEd +lv +++ +G+g+W++++   g+ R+ k+c++rw +yl
  Kalax.0085s0059.1.p 14 KGPWTPEEDIILVSYIQDHGPGNWRSVPTNTGLLRCSKSCRLRWTNYL 61
                         79******************************99************97 PP
2Myb_DNA-binding491.4e-1567112148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg++T +E++ ++++ ++lG++ W++Ia++++  Rt++++k++w+++l
  Kalax.0085s0059.1.p  67 RGNFTDQEEKMIIHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 112
                          89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.6E-23564IPR009057Homeodomain-like
PROSITE profilePS5129416.941961IPR017930Myb domain
SuperFamilySSF466898.58E-3011108IPR009057Homeodomain-like
SMARTSM007176.5E-141363IPR001005SANT/Myb domain
PfamPF002492.3E-151461IPR001005SANT/Myb domain
CDDcd001672.12E-111661No hitNo description
PROSITE profilePS5129424.22262116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-2465117IPR009057Homeodomain-like
SMARTSM007174.0E-1566114IPR001005SANT/Myb domain
PfamPF002491.4E-1467112IPR001005SANT/Myb domain
CDDcd001675.60E-1169111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MGRPPCCDKL GVKKGPWTPE EDIILVSYIQ DHGPGNWRSV PTNTGLLRCS KSCRLRWTNY  60
LRPGIRRGNF TDQEEKMIIH LQALLGNRWA AIASYLPQRT DNDIKNYWNT HLKKKLKKLQ  120
SGTNDSSQDD NSSSSSASRH TAPKGQWERR LQTDIHMAKQ ALCEALSLDK PIYETADKSH  180
SPHQPASNSN NLNLLLTPTP TSIMGVTQSP SMPATTTYAS NAENIARLLE NWSKKKSSSF  240
GSASNQMTII NSGAVSQSYS FKSQEHQQHV GSSSCSEGTL SSTTPDQFES IFDNSNNVTL  300
HHDSTLMYQA ESKPLNMEDQ APQMPLTLLE KWLLFDDGTN NGITSQGQDG LLDMSLDGNS  360
VFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-251411627128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023875403.11e-134myb-related protein 306-like
SwissprotP813921e-120MYB06_ANTMA; Myb-related protein 306
TrEMBLA0A2N9J4F31e-136A0A2N9J4F3_FAGSY; Uncharacterized protein
STRINGEMJ104751e-130(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47600.11e-101myb domain protein 94
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]