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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0080s0077.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | AP2 | ||||||||
Protein Properties | Length: 462aa MW: 51925 Da PI: 8.8308 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.6 | 5.7e-17 | 120 | 169 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g Kalax.0080s0077.1.p 120 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 169 78*******************......55************************997 PP | |||||||
2 | AP2 | 44 | 5.6e-14 | 212 | 262 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+t+ eAa+a+++a+ k +g Kalax.0080s0077.1.p 212 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEIEAARAYDKAAIKCNG 262 89********.7******5553..2.26**********99**********99776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.2E-9 | 120 | 169 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.54E-16 | 120 | 178 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 5.6E-17 | 121 | 177 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.46E-11 | 121 | 176 | No hit | No description |
PROSITE profile | PS51032 | 17.794 | 121 | 177 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.9E-32 | 121 | 183 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.2E-9 | 212 | 262 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.49E-25 | 212 | 272 | No hit | No description |
SuperFamily | SSF54171 | 3.79E-17 | 212 | 272 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.2E-16 | 213 | 270 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.659 | 213 | 270 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.9E-31 | 213 | 276 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.3E-6 | 214 | 225 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.3E-6 | 252 | 272 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 462 aa Download sequence Send to blast |
MRDLNGSPNT SDKFINRDNS SSSEDEHNPA AETTENVARK RSSKIFGFSV SHEDDESASA 60 MTTRQFFPVD GETVSSSSSG FPRAHWVGVK FCQSEPPGVP SASHLQPLKK SRRGPRSRSS 120 QYRGVTFYRR TGRWESHIWD CGKQVYLGGF DTAHAAARAY DRAAIKFRGV DADINFNLDD 180 YQVDLKQMSN LTKEEFVHVL RRQSTGFPRG SSKYRGVTLH KCGRWEARMG QFLGKKYVYL 240 GLFDTEIEAA RAYDKAAIKC NGKDAVTNFD PSIYENEITN SPEYSGGNSD HDLDLSLGNS 300 RHKQKVLQVD DVEQPVPMDP QSYDPDLLSS PYSFRPMHQE VRRRFSRTEP SQLLSQTPQQ 360 SPSNEQQQQE QYGRGGEPSM LPPTSNFHQI QIPSRRNVSS RGNCELSLST TSNNQHWQTT 420 EMFGNAAASS GFPSYTTRQN WSSSQGRTGF RSPPLYHPRP S* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that promotes early floral meristem identity (PubMed:7919989). Is required subsequently for the transition of an inflorescence meristem into a floral meristem (PubMed:1675158). Plays a central role in the specification of floral identity, particularly for the normal development of sepals and petals in the wild-type flower, by spatially controlling the expression domains of multiple floral organ identity genes (PubMed:1675158, PubMed:23034631). Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in association with other repressors like LEUNIG and SEUSS (PubMed:1675158). Directly represses AGAMOUS by recruiting the transcriptional corepressor TOPLESS and the histone deacetylase HDA19 (PubMed:23034631). It is also required during seed development (PubMed:1675158). {ECO:0000269|PubMed:1675158, ECO:0000269|PubMed:23034631, ECO:0000269|PubMed:7919989}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by the C class floral homeotic protein AGAMOUS in stamens and carpels. MicroRNA 172 (miRNA172) negatively regulates APETALA2 at the translational level and may modulate its expression pattern. Seems not to be influenced by jasmonate and Alternaria brassicicola. {ECO:0000269|PubMed:12805630, ECO:0000269|PubMed:12893888, ECO:0000269|PubMed:14555699}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010652782.1 | 1e-154 | PREDICTED: transcription factor APETALA2 isoform X1 | ||||
Swissprot | P47927 | 1e-119 | AP2_ARATH; Floral homeotic protein APETALA 2 | ||||
TrEMBL | F6H4H7 | 1e-153 | F6H4H7_VITVI; Uncharacterized protein | ||||
STRING | VIT_07s0031g00220.t01 | 1e-154 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36920.2 | 1e-120 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0080s0077.1.p |