PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0079s0043.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HD-ZIP
Protein Properties Length: 441aa    MW: 48815.4 Da    PI: 9.0194
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0079s0043.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox566.5e-18125179256
                          T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          rk+ ++t++q   Lee F+++++++ ++++ LAk+lgL  rqV vWFqNrRa+ k
  Kalax.0079s0043.1.p 125 RKKLRLTRDQSLLLEETFKEHNTLNPRQKQALAKQLGLRARQVEVWFQNRRARTK 179
                          788899***********************************************98 PP
2HD-ZIP_I/II113.21.7e-36125214191
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          +kk+rl+++q+ lLEe+F+e+++L+p++K++la++Lgl++rqv+vWFqnrRARtk+kq+E ++e++kr++++l+++ +rL+kev+eLr +
  Kalax.0079s0043.1.p 125 RKKLRLTRDQSLLLEETFKEHNTLNPRQKQALAKQLGLRARQVEVWFQNRRARTKLKQTEAECEYMKRNCESLMDRVRRLQKEVNELR-A 213
                          69*************************************************************************************9.5 PP

          HD-ZIP_I/II  91 l 91 
                          l
  Kalax.0079s0043.1.p 214 L 214
                          5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.3E-18107179IPR009057Homeodomain-like
SuperFamilySSF466895.99E-18111182IPR009057Homeodomain-like
PROSITE profilePS5007117.41121181IPR001356Homeobox domain
SMARTSM003897.0E-15123185IPR001356Homeobox domain
PfamPF000462.6E-15125179IPR001356Homeobox domain
CDDcd000861.51E-14125182No hitNo description
PRINTSPR000312.4E-5152161IPR000047Helix-turn-helix motif
PROSITE patternPS000270156179IPR017970Homeobox, conserved site
PRINTSPR000312.4E-5161177IPR000047Helix-turn-helix motif
SMARTSM003408.0E-18181224IPR003106Leucine zipper, homeobox-associated
PfamPF059101.3E-28304427IPR008586Protein of unknown function DUF868, plant
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MSAATQRKVM VMSSSDFGLG GLDLNLSLHV TTEPLTQELQ PHEPDSLSPI PVLNLAPDLS  60
PGQKVVDLTR SPTSGDQVEE GGSQNSTLST LSLKRTHPEE EPHQVPDRES PPRGGSDEED  120
GENARKKLRL TRDQSLLLEE TFKEHNTLNP RQKQALAKQL GLRARQVEVW FQNRRARTKL  180
KQTEAECEYM KRNCESLMDR VRRLQKEVNE LRALKLAPQF YMQMPPATTL TLCPSCERVG  240
IPTPAGGPVN KSRAGVERVQ RHHTWKAFCT KMRDIASCLG EYAVAVADTA SWASSSTQGS  300
GSSIQNASTS LYNITLSTQK KLTITITWCK SHTSRGLSIS FDNASSLQAF NLNTNSIFKR  360
LKGAKVIESK NTKVEIIWDL SAAKYQNGPE PVNKYFVLVI IDSEIGLSLG DMATDEANMR  420
IKNSARQALV EATWPQMKPT *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1173181RRARTKLKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16780.12e-69homeobox protein 2