PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0073s0091.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 455aa    MW: 50315 Da    PI: 7.0386
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0073s0091.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.62.6e-172976148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT  Ed +l+d+v+++G g+W+++ r  g+ R++k+c++rw ++l
  Kalax.0073s0091.1.p 29 KGPWTSAEDAILIDYVRKHGEGNWNAVQRNSGLQRCGKSCRLRWANHL 76
                         79******************************************9986 PP
2Myb_DNA-binding50.25.8e-1682125146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          +g++T++E+ l++++++++G++ W++ a+ m+ gRt++++k++w++
  Kalax.0073s0091.1.p  82 KGAFTPDEERLILELHAKFGNK-WARMAAQMQ-GRTDNEIKNYWNT 125
                          799*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.2462476IPR017930Myb domain
SuperFamilySSF466895.24E-3027123IPR009057Homeodomain-like
SMARTSM007179.5E-142878IPR001005SANT/Myb domain
PfamPF002499.4E-152976IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-233083IPR009057Homeodomain-like
CDDcd001673.02E-113176No hitNo description
PROSITE profilePS5129424.90777131IPR017930Myb domain
SMARTSM007171.9E-1581129IPR001005SANT/Myb domain
PfamPF002494.8E-1582125IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.2E-2584129IPR009057Homeodomain-like
CDDcd001672.53E-1184125No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0009789Biological Processpositive regulation of abscisic acid-activated signaling pathway
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0090406Cellular Componentpollen tube
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MMASSSSHGE TTTRSSGGGA AEEVVALKKG PWTSAEDAIL IDYVRKHGEG NWNAVQRNSG  60
LQRCGKSCRL RWANHLRPDL KKGAFTPDEE RLILELHAKF GNKWARMAAQ MQGRTDNEIK  120
NYWNTRMKRH QRAGLAIYPT HIQSGHRQHR LQRHRKQQQH AMKSTTSHTQ MLDFQNQTAI  180
NFNNPSSQSQ PFLFTTHQVP IPSHHHQFNF FTEQKNANDQ QSCDQTSLSS AAGSHSLFLA  240
NPLHQALELK NNEPDSSAGI IGSSDFGLVH LSGSHMSSMQ SVGCDDHRLS KANVSSGMLD  300
DVVYLNAVEF GNEKDDSSNQ RLLLMPASKK MKDCGVTTPE NSNSGLTSIG MRVEEPAVVE  360
MMNPLDDDEL TSLLYSFPSA SPTPQWYRRG TTNTDNDSSG DAYGGVVLDL IHRPAMTLPD  420
HLMPSDPAAN GQDLSLEGSP TSTLMLWHNL PTIY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-28271295106B-MYB
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00287DAPTransfer from AT2G32460Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.15e-70myb domain protein 101