PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0073s0077.3.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 948aa    MW: 106821 Da    PI: 5.6001
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0073s0077.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.19.4e-14853248
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         g W   Ede+l+ av ++G+++W++I++ +  ++++kqck rw+ +l
  Kalax.0073s0077.3.p  8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53
                         78*****************************.************986 PP
2Myb_DNA-binding32.91.6e-1060103248
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            WT eEde+l+++ k++++  W+tIa  +g  Rt+ qc +r+ k+l
  Kalax.0073s0077.3.p  60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103
                          68*****************99.********8..**********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.008257IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.6E-18556IPR009057Homeodomain-like
SMARTSM007177.0E-15655IPR001005SANT/Myb domain
PfamPF139214.1E-131070No hitNo description
CDDcd001671.24E-111053No hitNo description
SuperFamilySSF466897.91E-2133106IPR009057Homeodomain-like
CDDcd116593.44E-3055106No hitNo description
Gene3DG3DSA:1.10.10.603.3E-1457104IPR009057Homeodomain-like
PROSITE profilePS5129416.44358107IPR017930Myb domain
SMARTSM007171.7E-1258105IPR001005SANT/Myb domain
PfamPF118313.4E-56407655IPR021786Pre-mRNA splicing factor component Cdc5p/Cef1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 948 aa     Download sequence    Send to blast
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT  60
EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACARD ENYEPGDDPR  120
KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR  180
LASLQKKREL KAAGIDNRHR KRKRKGIDYN AEIPFEKKPP PGFYDVTDED RPVEQPKFPT  240
TIEELEGKRR ADVEAQLRRQ DAARNKIAER QDVLSAIVQA NKLNDPETVR KRSKLMLPPP  300
QISDQELEEI AKMGYASDLL AGSEELTEGS GATRALLAQY AQTPLPGMSQ LRTPQRTPAG  360
KGDAIMMEAE NLARLRESQT PLLGGENPEL HPSDFSGVTP KKREIQTPNV MLTPSSTPGA  420
AGLTPRIGMT PARDGYSFGL TPKGTPIRDG LHINEGLEVH DSVKLEQRKR ADMKRSLLSG  480
LSGLPQPKNE YQIVMQPPPD DDEDLEEKIE EDMSDRLARE RAEEEARIQV LLRKRSKVLQ  540
RELPRPPVSS LDLLKNSLMR TDEDKSSFVP PTSIEQADEL IRKEFLCLLE HDNAKYPLEE  600
KSEKDKKIRG KRGKFAGTVP TIDDFEEDEM KEAGIMIKEE AEFLRAAMGH ENGSLEEFVE  660
AHKTCLNDLM YFPTRNAYGL SSVAGNAEKI SALQSEFEHV KKRMDEDTRK AQKLEQKIKV  720
LTQGYQGRSL KLWSQVEATS KQKDTATTEL ECFRVLHKQE QLAASHRING LREEVKKQKE  780
LEETLQRHYG KLLVEQERVK SLVNEYRLQE EMAAEKCAAE LSDAAATAAI TNIPNDATAF  840
SESTDLVASS AEHANATIKG ESSPSRVPRK SMDVAQEQTF SISNLDAEAN KADIAQSNEE  900
QAPTEVSYLV STSEDQEDES LKSEDKAEQD QAAHVSARQG NETETGN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5mqf_L0.028013800Cell division cycle 5-like protein
5xjc_L0.028013800Cell division cycle 5-like protein
5yzg_L0.028013800Cell division cycle 5-like protein
5z56_L0.028013800Cell division cycle 5-like protein
5z57_L0.028013800Cell division cycle 5-like protein
5z58_L0.028013800Cell division cycle 5-like protein
6ff4_L0.028013800Cell division cycle 5-like protein
6ff7_L0.028013800Cell division cycle 5-like protein
6icz_L0.028013800Cell division cycle 5-like protein
6id0_L0.028013800Cell division cycle 5-like protein
6id1_L0.028013800Cell division cycle 5-like protein
6qdv_O0.028013800Cell division cycle 5-like protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1185204KKRELKAAGIDNRHRKRKRK
2199204RKRKRK
Functional Description ? help Back to Top
Source Description
UniProtComponent of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021651237.10.0cell division cycle 5-like protein
SwissprotP929480.0CDC5L_ARATH; Cell division cycle 5-like protein
TrEMBLA0A2R6PKF60.0A0A2R6PKF6_ACTCH; Cell division cycle 5-like protein
STRINGcassava4.1_000851m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09770.10.0cell division cycle 5
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Li S, et al.
    MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis.
    Plant Cell, 2018. 30(2): p. 481-494
    [PMID:29437988]