PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0073s0062.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HD-ZIP
Protein Properties Length: 306aa    MW: 34236.5 Da    PI: 4.2042
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0073s0062.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.94e-1957110356
                          --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          k+++++ +q+++Le+ Fe ++++  e++ +LA++lgL+ rqV vWFqNrRa++k
  Kalax.0073s0062.1.p  57 KKRRLSVHQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 110
                          56689************************************************9 PP
2HD-ZIP_I/II128.72.5e-4156148193
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          ekkrrls +qvk+LE++Fe e+kLeperKv+la+eLglqprqvavWFqnrRAR+ktkqlE+dy +Lk++yd+lk + ++L++++++L +e
  Kalax.0073s0062.1.p  56 EKKRRLSVHQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKSNYDNLKLNFDALQRDKDSLLKE 145
                          69*************************************************************************************999 PP

          HD-ZIP_I/II  91 lke 93 
                          +++
  Kalax.0073s0062.1.p 146 IRD 148
                          875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.8E-1949114IPR009057Homeodomain-like
PROSITE profilePS5007117.83152112IPR001356Homeobox domain
SMARTSM003898.1E-1855116IPR001356Homeobox domain
CDDcd000867.01E-1757113No hitNo description
PfamPF000462.5E-1657110IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.5E-2059119IPR009057Homeodomain-like
PRINTSPR000318.4E-68392IPR000047Helix-turn-helix motif
PROSITE patternPS00027087110IPR017970Homeobox, conserved site
PRINTSPR000318.4E-692108IPR000047Helix-turn-helix motif
PfamPF021833.1E-17112153IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0030308Biological Processnegative regulation of cell growth
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048573Biological Processphotoperiodism, flowering
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MKRLSSSDSL GALMSICPNS DEQGQQQQGH VYSREFQSML DGLDSDGCVE ESQASEKKRR  60
LSVHQVKALE KNFEVENKLE PERKVKLAQE LGLQPRQVAV WFQNRRARWK TKQLERDYGV  120
LKSNYDNLKL NFDALQRDKD SLLKEIRDLK SKLSQETPDQ SNNLSVKEEE DYEEEEDFEE  180
DDADDTELII SEPPQNAAAA AMLNDSSGVV SLFPDLGGFT TTTTTTSSAD SDSSAILNDS  240
KGSPNGAVSS GALQNVMLTT SSCSEYHPEF VKMEEQSLFG GEESCDFFSE EQAPTLHWYC  300
PDQWT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104112RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function as a negative regulator of the flowering time response to photoperiod. May act to repress cell expansion during plant development. {ECO:0000269|PubMed:14623244}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00051PBMTransfer from AT4G40060Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0682441e-39AK068244.1 Oryza sativa Japonica Group cDNA clone:J013140I04, full insert sequence.
GenBankAK1068181e-39AK106818.1 Oryza sativa Japonica Group cDNA clone:002-116-D05, full insert sequence.
GenBankAP0053911e-39AP005391.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBb0092C08.
GenBankAP0149641e-39AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126161e-39CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
GenBankCT8294461e-39CT829446.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA031N19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021636428.11e-113homeobox-leucine zipper protein ATHB-6
SwissprotQ940J13e-80ATB16_ARATH; Homeobox-leucine zipper protein ATHB-16
TrEMBLA0A1Q3B5I21e-114A0A1Q3B5I2_CEPFO; Homeobox domain-containing protein/HALZ domain-containing protein
STRINGcassava4.1_012419m1e-109(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.11e-73homeobox protein 16
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]