 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Kalax.0073s0062.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 306aa MW: 34236.5 Da PI: 4.2042 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Kalax.0073s0062.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 59.9 | 4e-19 | 57 | 110 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k+++++ +q+++Le+ Fe ++++ e++ +LA++lgL+ rqV vWFqNrRa++k
Kalax.0073s0062.1.p 57 KKRRLSVHQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 110
56689************************************************9 PP
|
| 2 | HD-ZIP_I/II | 128.7 | 2.5e-41 | 56 | 148 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90
ekkrrls +qvk+LE++Fe e+kLeperKv+la+eLglqprqvavWFqnrRAR+ktkqlE+dy +Lk++yd+lk + ++L++++++L +e
Kalax.0073s0062.1.p 56 EKKRRLSVHQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKSNYDNLKLNFDALQRDKDSLLKE 145
69*************************************************************************************999 PP
HD-ZIP_I/II 91 lke 93
+++
Kalax.0073s0062.1.p 146 IRD 148
875 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009637 | Biological Process | response to blue light |
| GO:0030308 | Biological Process | negative regulation of cell growth |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase |
| GO:0048573 | Biological Process | photoperiodism, flowering |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 306 aa
Download sequence Send
to blast |
MKRLSSSDSL GALMSICPNS DEQGQQQQGH VYSREFQSML DGLDSDGCVE ESQASEKKRR 60
LSVHQVKALE KNFEVENKLE PERKVKLAQE LGLQPRQVAV WFQNRRARWK TKQLERDYGV 120
LKSNYDNLKL NFDALQRDKD SLLKEIRDLK SKLSQETPDQ SNNLSVKEEE DYEEEEDFEE 180
DDADDTELII SEPPQNAAAA AMLNDSSGVV SLFPDLGGFT TTTTTTSSAD SDSSAILNDS 240
KGSPNGAVSS GALQNVMLTT SSCSEYHPEF VKMEEQSLFG GEESCDFFSE EQAPTLHWYC 300
PDQWT*
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 104 | 112 | RRARWKTKQ |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor that may function as a negative regulator of the flowering time response to photoperiod. May act to repress cell expansion during plant development. {ECO:0000269|PubMed:14623244}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AK068244 | 1e-39 | AK068244.1 Oryza sativa Japonica Group cDNA clone:J013140I04, full insert sequence. |
| GenBank | AK106818 | 1e-39 | AK106818.1 Oryza sativa Japonica Group cDNA clone:002-116-D05, full insert sequence. |
| GenBank | AP005391 | 1e-39 | AP005391.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBb0092C08. |
| GenBank | AP014964 | 1e-39 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. |
| GenBank | CP012616 | 1e-39 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. |
| GenBank | CT829446 | 1e-39 | CT829446.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA031N19, full insert sequence. |
