PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

MYB

Protein Properties

Length: 286aa MW: 32626.4 Da PI: 7.043

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0072s0043.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27	1.1e-08	26	70	3	45
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 W+ eE +l+ a + + ++ +W+++a++++ g++ ++++ + Kalax.0072s0043.1.p 26 YWSREENKLFESALAIYDKNtadRWEKVAQMIP-GKSVSDVINQYK 70 5******************************.*******997 PP
2	Myb_DNA-binding	40.6	5.8e-13	126	170	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E+ +++ + ++G g+W++I+r + +t+ q+ s+ qky Kalax.0072s0043.1.p 126 PWTEDEHRRFLMGLLKHGRGDWRSISRNFVGSKTPTQVASHAQKY 170 8**************************999**********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.4E-4	20	71	IPR009057	Homeodomain-like
PROSITE profile	PS51293	10.063	22	75	IPR017884	SANT domain
SMART	SM00717	1.3E-9	23	75	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	8.22E-12	25	80	IPR009057	Homeodomain-like
Pfam	PF00249	3.5E-7	26	71	IPR001005	SANT/Myb domain
CDD	cd00167	7.06E-9	27	72	No hit	No description
PROSITE profile	PS51294	16.278	119	175	IPR017930	Myb domain
SuperFamily	SSF46689	3.14E-16	121	175	IPR009057	Homeodomain-like
SMART	SM00717	5.7E-10	123	173	IPR001005	SANT/Myb domain
TIGRFAMs	TIGR01557	1.6E-16	123	173	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	1.2E-9	123	169	IPR009057	Homeodomain-like
CDD	cd00167	5.73E-9	126	171	No hit	No description
Pfam	PF00249	2.5E-10	126	170	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MTMETVYQTF QLQDSNWLPQ KSHGSYWSRE ENKLFESALA IYDKNTADRW EKVAQMIPGK 60 SVSDVINQYK ELEDDVSYIE AGLVPTPGYL TSSFTLELGD DRDFDALRKK SARARSADHE 120 KRKGVPWTED EHRRFLMGLL KHGRGDWRSI SRNFVGSKTP TQVASHAQKY FLRLNSGMRD 180 KRRPSIHDIT TTNITNPPPS DEFRVGAFDQ FLMLPPPDKE ASDNVVLDWN QHQNASAAAL 240 EPDNGNLFVP PAPYENLYAT AYHGLQVRPH NPMFEVQSAR QRIRG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	8e-17	21	108	5	91	RADIALIS
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269\|PubMed:11937495, ECO:0000269\|PubMed:9118809}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018821689.1	1e-110	PREDICTED: transcription factor DIVARICATA-like
Swissprot	Q8S9H7	5e-76	DIV_ANTMA; Transcription factor DIVARICATA
TrEMBL	A0A2N9H1W5	1e-111	A0A2N9H1W5_FAGSY; Uncharacterized protein
STRING	EMJ20461	1e-107	(Prunus persica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38090.1	4e-74	MYB family protein

Link Out ? help Back to Top
Phytozome	Kalax.0072s0043.1.p

Publications ? help Back to Top
Galego L,Almeida J Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers. Genes Dev., 2002. 16(7): p. 880-91 [PMID:11937495] Almeida J,Rocheta M,Galego L Genetic control of flower shape in Antirrhinum majus. Development, 1997. 124(7): p. 1387-92 [PMID:9118809]