PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0069s0102.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

HD-ZIP

Protein Properties

Length: 730aa MW: 80074.8 Da PI: 6.1525

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0069s0102.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.9	4.8e-20	58	113	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t+ q++e+e++F+++++p+ ++r+eL+++lgL+ qVk+WFqN+R+++k Kalax.0069s0102.1.p 58 KKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 113 688999***********************************************998 PP
2	START	217.7	4e-68	246	466	1	206
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.... CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla.... 77 ela +a++el+++a+a++p+W s+ e++ ++e+l++f+++ + ++ea+r+s+vv+m++ +lve+l+d++ qW+ + Kalax.0069s0102.1.p 246 ELAVAAMEELIRMAQAGDPLWIPSAdnstEILCEEEYLRTFPRGIGpkplgLKSEASRESAVVIMNHINLVEILMDVN-QWSSIFSgivs 334 57899******************99999999******999****************************.******* PP EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTC CS START 78 kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksng 160 +a+tlev+s+g galq+++ae+q++splvp R+ +fvRy++q+++g+w++vdvS+ds ++ p v R++++pSg+li++++ng Kalax.0069s0102.1.p 335 RAMTLEVLSTGvagnynGALQVITAEFQVPSPLVPtRENYFVRYCKQHPDGTWAVVDVSLDSLRPSP----VTRSRRRPSGCLIQEMPNG 420 *************************************************************98....7************** PP EEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 161 hskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 +skvtwvehv+ ++r +h+++r+lv+s +a+gak+wvatl+rqce+ Kalax.0069s0102.1.p 421 YSKVTWVEHVEADDRGVHNIYRPLVNSNHAFGAKRWVATLDRQCER 466 ******************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.4E-22	37	113	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.27E-19	43	114	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.698	55	115	IPR001356	Homeobox domain
SMART	SM00389	3.1E-19	56	119	IPR001356	Homeobox domain
CDD	cd00086	8.80E-19	58	116	No hit	No description
Pfam	PF00046	1.2E-17	58	113	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	90	113	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	45.162	237	469	IPR002913	START domain
SuperFamily	SSF55961	7.77E-37	237	468	No hit	No description
CDD	cd08875	1.57E-127	241	465	No hit	No description
SMART	SM00234	2.2E-68	246	466	IPR002913	START domain
Pfam	PF01852	7.6E-57	247	466	IPR002913	START domain
Gene3D	G3DSA:3.30.530.20	2.1E-6	345	461	IPR023393	START-like domain
SuperFamily	SSF55961	1.26E-23	485	723	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 730 aa Download sequence Send to blast
MYQPNLFVDT SHHLLLDMGH SKTPDNELGS LRDEDFESKS GTEAQSGDEQ DPNQRPKKKR 60 YHRHTQRQIQ EMEAFFKECP HPDDKQRKEL SRELGLEPLQ VKFWFQNKRT QMKGQHERHE 120 NSQLRAENEK LRADNMRYKE ALGNATCPNC GGPAAIGEMS FDEQHLRIEN ARLREEIDRI 180 SGIAAKYIGK PLVTYPHLPS RPSLEIGVGN FGPQTGGMAE GDMFGVSDLL RSVSGPTEAD 240 KPIIIELAVA AMEELIRMAQ AGDPLWIPSA DNSTEILCEE EYLRTFPRGI GPKPLGLKSE 300 ASRESAVVIM NHINLVEILM DVNQWSSIFS GIVSRAMTLE VLSTGVAGNY NGALQVITAE 360 FQVPSPLVPT RENYFVRYCK QHPDGTWAVV DVSLDSLRPS PVTRSRRRPS GCLIQEMPNG 420 YSKVTWVEHV EADDRGVHNI YRPLVNSNHA FGAKRWVATL DRQCERLASL MASNINTGDV 480 GVITRPDGRK SMLKLAERMV MSFCGGVGAS TAHTWTTLSG TSADDVRVMT RKSMDDPGRP 540 PGIVLSAATS FWIPVSSKRV FDFLRDENSR NEWDILSNGG LVQDMAHIAN GRDPGNCVSL 600 LRVNSANSSQ SNMLILQESS TDVTGSYVIY APVDIVAMNV VLNGGDPDYV ALLPSGFAIL 660 PDNGLSSLAP IGGQHGVLDV GSCGSLLTVA FQILVDSIPT AKLSLGSVAT VNSLIKCTVE 720 RIKAALSCP*

Sequence ? help Back to Top

Protein Sequence Length: 730 aa Download sequence Send to blast

MYQPNLFVDT SHHLLLDMGH SKTPDNELGS LRDEDFESKS GTEAQSGDEQ DPNQRPKKKR  60
YHRHTQRQIQ EMEAFFKECP HPDDKQRKEL SRELGLEPLQ VKFWFQNKRT QMKGQHERHE  120
NSQLRAENEK LRADNMRYKE ALGNATCPNC GGPAAIGEMS FDEQHLRIEN ARLREEIDRI  180
SGIAAKYIGK PLVTYPHLPS RPSLEIGVGN FGPQTGGMAE GDMFGVSDLL RSVSGPTEAD  240
KPIIIELAVA AMEELIRMAQ AGDPLWIPSA DNSTEILCEE EYLRTFPRGI GPKPLGLKSE  300
ASRESAVVIM NHINLVEILM DVNQWSSIFS GIVSRAMTLE VLSTGVAGNY NGALQVITAE  360
FQVPSPLVPT RENYFVRYCK QHPDGTWAVV DVSLDSLRPS PVTRSRRRPS GCLIQEMPNG  420
YSKVTWVEHV EADDRGVHNI YRPLVNSNHA FGAKRWVATL DRQCERLASL MASNINTGDV  480
GVITRPDGRK SMLKLAERMV MSFCGGVGAS TAHTWTTLSG TSADDVRVMT RKSMDDPGRP  540
PGIVLSAATS FWIPVSSKRV FDFLRDENSR NEWDILSNGG LVQDMAHIAN GRDPGNCVSL  600
LRVNSANSSQ SNMLILQESS TDVTGSYVIY APVDIVAMNV VLNGGDPDYV ALLPSGFAIL  660
PDNGLSSLAP IGGQHGVLDV GSCGSLLTVA FQILVDSIPT AKLSLGSVAT VNSLIKCTVE  720
RIKAALSCP*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269\|PubMed:12505995}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002266688.1	0.0	PREDICTED: homeobox-leucine zipper protein MERISTEM L1
Swissprot	Q93V99	0.0	PDF2_ARATH; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2
TrEMBL	A0A438JG68	0.0	A0A438JG68_VITVI; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2
TrEMBL	E0CVM0	0.0	E0CVM0_VITVI; Uncharacterized protein
STRING	VIT_10s0116g00680.t01	0.0	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G04890.1	0.0	protodermal factor 2

Link Out ? help Back to Top
Phytozome	Kalax.0069s0102.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]