PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0068s0087.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 305aa    MW: 34110.2 Da    PI: 6.925
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0068s0087.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.35.4e-112267346
                         SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                         +WT+eE + + +a + + ++   +W++Ia++++ g+t  ++++ ++ 
  Kalax.0068s0087.1.p 22 KWTKEENKEFERALAIHDKNttdRWDKIAAMIP-GKTVTDVINQYRE 67
                         8********************************.**********986 PP
2Myb_DNA-binding41.72.7e-13127171347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +WT+ E+++++ +  ++G+g+W+ I+r +  ++t+ q+ s+ qky
  Kalax.0068s0087.1.p 127 PWTEAEHKRFLMGLVKHGKGDWRNISRNFVRTKTPTQVASHAQKY 171
                          8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.2441871IPR017884SANT domain
SMARTSM007176.2E-111971IPR001005SANT/Myb domain
SuperFamilySSF466892.02E-122176IPR009057Homeodomain-like
PfamPF002492.2E-92267IPR001005SANT/Myb domain
CDDcd001671.42E-102268No hitNo description
Gene3DG3DSA:1.10.10.604.0E-52268IPR009057Homeodomain-like
PROSITE profilePS5129416.83120176IPR017930Myb domain
SuperFamilySSF466894.59E-16122176IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-15123174IPR006447Myb domain, plants
SMARTSM007172.2E-10124174IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-9124170IPR009057Homeodomain-like
PfamPF002498.8E-11127171IPR001005SANT/Myb domain
CDDcd001671.43E-8127172No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MEALYPMSHV VNPDWFLADP PKWTKEENKE FERALAIHDK NTTDRWDKIA AMIPGKTVTD  60
VINQYRELED DVSDIEAGLV PIPGYHGSSF TLDLMDDSLR FNGERKRHTP AAAAAAAAEH  120
EKKKGVPWTE AEHKRFLMGL VKHGKGDWRN ISRNFVRTKT PTQVASHAQK YFIRLNSGVK  180
DKRRPSIHDI TTGSLADSAT ASGMDKAQSV AALPREEEKN MTHNAQAPTN VEDGAVWNKQ  240
DMNDKTESSF LMSDLGQRDL FTTLPSTCET NSLHVQGQNV YNVAYGGQYN PLFQIQSSRQ  300
RIVG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A8e-14231011187RADIALIS
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011036008.13e-96PREDICTED: transcription factor DIVARICATA-like
TrEMBLB9HT092e-93B9HT09_POPTR; Uncharacterized protein
STRINGPOPTR_0010s20040.13e-94(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.18e-81MYB family protein