PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0067s0087.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family AP2
Protein Properties Length: 349aa    MW: 37769.8 Da    PI: 6.6293
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0067s0087.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.25.6e-1583132355
                  AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Kalax.0067s0087.2.p  83 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 132
                          9***************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103211.258146IPR001471AP2/ERF domain
CDDcd000181.14E-11547No hitNo description
SMARTSM003804.1E-6552IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-91047IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.3E-91346IPR001471AP2/ERF domain
SuperFamilySSF541714.58E-1881142IPR016177DNA-binding domain
CDDcd000181.98E-2581142No hitNo description
Gene3DG3DSA:3.30.730.101.6E-1882141IPR001471AP2/ERF domain
PROSITE profilePS5103219.20382140IPR001471AP2/ERF domain
SMARTSM003807.1E-3382146IPR001471AP2/ERF domain
PfamPF008477.7E-1083132IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0040019Biological Processpositive regulation of embryonic development
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MLEIARIDDC GLSVYLGGYD KEDKAARAYD LAALKYWGPT TTTNFPIGNY ERELEEMQNM  60
TRQEFVASLR RRSSGFSRGA SMYRGVTRHH QHGRWQARIG RVAGNKDLYL GTFSTQEEAA  120
EAYDIAAIKF RGLNAVTNFD MSRYDVKSIA NNNLPIGGMA SKPKISADSI SEGRSDNDRD  180
ISESSVSFAS PHQEPQPVNN SNLSFALPVK QDPVSSYWPA ILGCGSNQIT LATPSHNSHS  240
HPINNYFYSN NPTATGPQYS NNMNIYCATN GSSMAGSEPG SVGTSTVIPY GTPISMTMTS  300
SSSVVVGTYE NVSSSGSGIS NWVSPNLPQY QAGKPSLSVF QTPIFGVE*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021275979.11e-128LOW QUALITY PROTEIN: AP2-like ethylene-responsive transcription factor AIL5
SwissprotQ6PQQ31e-105AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A061GPU41e-127A0A061GPU4_THECC; AP2-like ethylene-responsive transcription factor AIL5, putative
STRINGEOY318701e-127(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.19e-87AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]